TCONS_00045443 (transcript) - C. hemisphaerica

Overview
NameTCONS_00045443
Unique NameTCONS_00045443
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length575

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00045443 ID=TCONS_00045443|Name=TCONS_00045443|organism=Clytia hemisphaerica|type=transcript|length=575bp
ACAACTGGCTATCCATGGATGAAGCAATCCTCAACATCCTTCCCTTCAAA
GACAATGGAGGAAATAACATTAACCAACAGCCAACTGGCGGAGGTTCAAA
AGGAGGTCAAACAAGAAGTAACACCATCCTGTCATCTCAATCAGAAACTT
ATCAATAACACCAAAGCCAGATATCGATTCTCTGGTTACTTGGTCGACCC
CAACAGTCATCGGTTTTCAAAAGTTGTCCGAATCATGGAATATGTACTTC
GATTCATTAATGTACATGTGTTCAAACAGAAATCACCTAGTCCATCACTA
ACAGAAGATGAACTTTGTCATTCAGAAAAGTACTTCTTCCGAAAGGCAAC
AAAGGAAATCAAGCATTTCACAGACCGTTCAAAGTACAAAAAGATATCAA
TGGAAAAGGATGGCATACTTATCCACATTGGACGTATATTGCCAACAGAT
TCAATCACTGTTCTGGGTAACTTGACAAAAACAACGAAGGATCTAAAGTC
CACGACATTTTGTGTTCCCCTTGTGGAAAAGTTCTCACCGATTGCCATCA
GCATTGTCAATGATATCCATTGGCA
Run BLAST on NCBI

protein sequence of TCONS_00045443-protein

>TCONS_00045443-protein ID=TCONS_00045443-protein|Name=TCONS_00045443-protein|organism=Clytia hemisphaerica|type=polypeptide|length=191bp
TTGYPWMKQSSTSFPSKTMEEITLTNSQLAEVQKEVKQEVTPSCHLNQKL
INNTKARYRFSGYLVDPNSHRFSKVVRIMEYVLRFINVHVFKQKSPSPSL
TEDELCHSEKYFFRKATKEIKHFTDRSKYKKISMEKDGILIHIGRILPTD
SITVLGNLTKTTKDLKSTTFCVPLVEKFSPIAISIVNDIHW
Run BLAST on NCBI

transcript from alignment at sc0007840:2..702-

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00045443 ID=TCONS_00045443|Name=TCONS_00045443|organism=Clytia hemisphaerica|type=transcript|length=701bp|location=Sequence derived from alignment at sc0007840:2..702- (Clytia hemisphaerica)
ACAACTGGCTATCCATGGATGAAGCAATCCTCAACATCCTTCCCTTCAAA
GACAATGGAGGAAATAACATTAACCAACAGCCAACTGGTGGAGGTTCAAA
AGGAGGTCAAACAAGAAGTAACACCATCTTGTCATTTCAATCAGAAATTT
ATCAATAACACCAAAGCCAGATATCGATTCTCTGGTTATNTAACATTAAC
CAACAGCCAACTGGCGGAGGTTCAAAAGGAGGTCAAACAAGAAGTAACAC
CATCCTGTCATCTCAATCAGAAACTTATCAATAACACCAAAGCCAGATAT
CGATTCTCTGGTTACTTGGTCGACCCCAACAGTCATCGGTTTTCAAAAGT
TGTCCGAATCATGGAATATGTACTTCGATTCATTAATGTACATGTGTTCA
AACAGAAATCACCTAGTCCATCACTAACAGAAGATGAACTTTGTCATTCA
GAAAAGTACTTCTTCCGAAAGGCAACAAAGGAAATCAAGCATTTCACAGA
CCGTTCAAAGTACAAAAAGATATCAATGGAAAAGGATGGCATACTTATCC
ACATTGGACGTATATTGCCAACAGATTCAATCACTGTTCTGGGTAACTTG
ACAAAAACAACGAAGGATCTAAAGTCCACGACATTTTGTGTTCCCCTTGT
GGAAAAGTTCTCACCGATTGCCATCAGCATTGTCAATGATATCCATTGGC
A

Coding sequence (CDS) from alignment at sc0007840:2..702-

>TCONS_00045443 ID=TCONS_00045443|Name=TCONS_00045443|organism=Clytia hemisphaerica|type=CDS|length=1146bp|location=Sequence derived from alignment at sc0007840:2..702- (Clytia hemisphaerica)
ATTAACCAACAGCCAACTGGCGGAGGTTCAAAAGGAGGTCAAACAAGAAG
TAACACCATCCTGTCATCTCAATCAGAAACTTATCAATAACACCAAAGCC
AGATATCGATTCTCTGGTTACTTGGTCGACCCCAACAGTCATCGGTTTTC
AAAAGTTGTCCGAATCATGGAATATGTACTTCGATTCATTAATGTACATG
TGTTCAAACAGAAATCACCTAGTCCATCACTAACAGAAGATGAACTTTGT
CATTCAGAAAAGTACTTCTTCCGAAAGGCAACAAAGGAAATCAAGCATTT
CACAGACCGTTCAAAGTACAAAAAGATATCAATGGAAAAGGATGGCATAC
TTATCCACATTGGACGTATATTGCCAACAGATTCAATCACTGTTCTGGGT
AACTTGACAAAAACAACGAAGGATCTAAAGTCCACGACATTTTGTGTTCC
CCTTGTGGAAAAGTTCTCACCGATTGCCATCAGCATTGTCAATGATATCC
ATTGGACAACTGGCTATCCATGGATGAAGCAATCCTCAACATCCTTCCCT
TCAAAGACAATGGAGGAAATAACATTAACCAACAGCCAACTGGCGGAGGT
TCAAAAGGAGGTCAAACAAGAAGTAACACCATCCTGTCATCTCAATCAGA
AACTTATCAATAACACCAAAGCCAGATATCGATTCTCTGGTTACTTGGTC
GACCCCAACAGTCATCGGTTTTCAAAAGTTGTCCGAATCATGGAATATGT
ACTTCGATTCATTAATGTACATGTGTTCAAACAGAAATCACCTAGTCCAT
CACTAACAGAAGATGAACTTTGTCATTCAGAAAAGTACTTCTTCCGAAAG
GCAACAAAGGAAATCAAGCATTTCACAGACCGTTCAAAGTACAAAAAGAT
ATCAATGGAAAAGGATGGCATACTTATCCACATTGGACGTATATTGCCAA
CAGATTCAATCACTGTTCTGGGTAACTTGACAAAAACAACGAAGGATCTA
AAGTCCACGACATTTTGTGTTCCCCTTGTGGAAAAGTTCTCACCGATTGC
CATCAGCATTGTCAATGATATCCATTGGACAACTGGCTATCCATGGATGA
AGCAATCCTCAACATCCTTCCCTTCAAAGACAATGGAGGAAATAAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_029021XLOC_029021Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00045443-proteinTCONS_00045443-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00045443-exon-sc0007840-1575043694:635..702TCONS_00045443-exon-sc0007840-1575043694:635..702Clytia hemisphaericaexon
TCONS_00045443-exon-sc0007840-1575043694:2..508TCONS_00045443-exon-sc0007840-1575043694:2..508Clytia hemisphaericaexon
TCONS_00045443-exon-sc0007840-1510915933:635..702TCONS_00045443-exon-sc0007840-1510915933:635..702Clytia hemisphaericaexon
TCONS_00045443-exon-sc0007840-1510915933:2..508TCONS_00045443-exon-sc0007840-1510915933:2..508Clytia hemisphaericaexon
TCONS_00045443-exon-sc0007840-1491911889:635..702TCONS_00045443-exon-sc0007840-1491911889:635..702Clytia hemisphaericaexon
TCONS_00045443-exon-sc0007840-1491911889:2..508TCONS_00045443-exon-sc0007840-1491911889:2..508Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0007840supercontigsc0007840:2..702 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.397034	0.174914	0.582931	0	2.58982	1.20473	0.849141	1.45097	0.631392	1.01179	0.544482	0.76792	1.39186	1.13292	1.43527	1.26675	1.6148	1.82539	0.46578	0.697983	1.14136	1.00931	0.434217	0.437815	0.697342	0.693378	0.967662	0	0.976609	0.54808
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00045443 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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