TCONS_00045429 (transcript) - C. hemisphaerica

Overview
NameTCONS_00045429
Unique NameTCONS_00045429
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length693

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00045429 ID=TCONS_00045429|Name=TCONS_00045429|organism=Clytia hemisphaerica|type=transcript|length=693bp
TCTAGGTTTTCAATAAGTTCTTCAATTTCCTggtttttatcgttttttga
cCTGGTTTTGTCTTCACTATCGCGTGAATTCCAGTTTGTCTCACTTTTTC
TGTTCTTTTCTTGACTCCCTCCTTCCATTTTACACCAGAAGAGTAGTCCT
TCGCAATCTGTACATACCCAGTGTACTTCTTTGATGTTTATACAACCTTC
ATATTTTTTCTCGATTTGATGACACTCTCCACATACCCATGTCTCACATA
GATCACACTGTATCCAttcaatgaattttttgtttcgtttatTTGTCTCT
TTGTCTACTCTACACTTTCCACATACATTCTCCCGTTGTTCTTTATCTGC
TGGGTTTGGCTGTGTTATCGCCTCAGCAATTTCCTTCTTCCCTTCTTCTG
TTTCTTCGTCTATATTTACAGTGTCTAtatttacatttacatttacatta
TCAACATCATTTACATCATCATTCTTcgctttttgcttattttgttttgt
tttggttttatccGCCATCTTGTCTTTCGCAAACAATATCTTTTGTCAGA
GATACAGATGCGACGGATGAATCGTGCACAAAAAGTGAAATGCTCTGGTC
TGTCTGGTCCTGGTGTGGTGCTTTGATTATGCTGGATGTTTGGCAGCTTA
GATACCAGTACTGTACTATATTTTGTCAAGGCCAGGCATTCCG
Run BLAST on NCBI

protein sequence of TCONS_00045429-protein

>TCONS_00045429-protein ID=TCONS_00045429-protein|Name=TCONS_00045429-protein|organism=Clytia hemisphaerica|type=polypeptide|length=172bp
MADKTKTKQNKQKAKNDDVNDVDNVNVNVNIDTVNIDEETEEGKKEIAEA
ITQPNPADKEQRENVCGKCRVDKETNKRNKKFIEWIQCDLCETWVCGECH
QIEKKYEGCINIKEVHWVCTDCEGLLFWCKMEGGSQEKNRKSETNWNSRD
SEDKTRSKNDKNQEIEELIENL
Run BLAST on NCBI

transcript from alignment at sc0007792:27..719

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00045429 ID=TCONS_00045429|Name=TCONS_00045429|organism=Clytia hemisphaerica|type=transcript|length=693bp|location=Sequence derived from alignment at sc0007792:27..719 (Clytia hemisphaerica)
CGGAATGCCTGGCCTTGACAAAATATAGTACAGTACTGGTATCTAAGCTG
CCAAACATCCAGCATAATCAAAGCACCACACCAGGACCAGACAGACCAGA
GCATTTCACTTTTTGTGCACGATTCATCCGTCGCATCTGTATCTCTGACA
AAAGATATTGTTTGCGAAAGACAAGATGGCggataaaaccaaaacaaaac
aaaataagcaaaaagcgAAGAATGATGATGTAAATGATGTTGAtaatgta
aatgtaaatgtaaataTAGACACTGTAAATATAGACGAAGAAACAGAAGA
AGGGAAGAAGGAAATTGCTGAGGCGATAACACAGCCAAACCCAGCAGATA
AAGAACAACGGGAGAATGTATGTGGAAAGTGTAGAGTAGACAAAGAGACA
AataaacgaaacaaaaaattcattgaaTGGATACAGTGTGATCTATGTGA
GACATGGGTATGTGGAGAGTGTCATCAAATCGAGAAAAAATATGAAGGTT
GTATAAACATCAAAGAAGTACACTGGGTATGTACAGATTGCGAAGGACTA
CTCTTCTGGTGTAAAATGGAAGGAGGGAGTCAAGAAAAGAACAGAAAAAG
TGAGACAAACTGGAATTCACGCGATAGTGAAGACAAAACCAGgtcaaaaa
acgataaaaaccAGGAAATTGAAGAACTTATTGAAAACCTAGA

Coding sequence (CDS) from alignment at sc0007792:27..719

>TCONS_00045429 ID=TCONS_00045429|Name=TCONS_00045429|organism=Clytia hemisphaerica|type=CDS|length=516bp|location=Sequence derived from alignment at sc0007792:27..719 (Clytia hemisphaerica)
ATGGCggataaaaccaaaacaaaacaaaataagcaaaaagcgAAGAATGA
TGATGTAAATGATGTTGAtaatgtaaatgtaaatgtaaataTAGACACTG
TAAATATAGACGAAGAAACAGAAGAAGGGAAGAAGGAAATTGCTGAGGCG
ATAACACAGCCAAACCCAGCAGATAAAGAACAACGGGAGAATGTATGTGG
AAAGTGTAGAGTAGACAAAGAGACAAataaacgaaacaaaaaattcattg
aaTGGATACAGTGTGATCTATGTGAGACATGGGTATGTGGAGAGTGTCAT
CAAATCGAGAAAAAATATGAAGGTTGTATAAACATCAAAGAAGTACACTG
GGTATGTACAGATTGCGAAGGACTACTCTTCTGGTGTAAAATGGAAGGAG
GGAGTCAAGAAAAGAACAGAAAAAGTGAGACAAACTGGAATTCACGCGAT
AGTGAAGACAAAACCAGgtcaaaaaacgataaaaaccAGGAAATTGAAGA
ACTTATTGAAAACCTA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_029007XLOC_029007Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00045429-proteinTCONS_00045429-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00045429-exon-sc0007792-1491911889:27..719TCONS_00045429-exon-sc0007792-1491911889:27..719Clytia hemisphaericaexon
TCONS_00045429-exon-sc0007792-1510915933:27..719TCONS_00045429-exon-sc0007792-1510915933:27..719Clytia hemisphaericaexon
TCONS_00045429-exon-sc0007792-1575043694:27..719TCONS_00045429-exon-sc0007792-1575043694:27..719Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0007792supercontigsc0007792:27..719 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.0714801	0	0	0.197701	0	0	0.264679	0.0617694	0	0	0.244091	0.682504	1.4682	0	0	0	0	0	0	0	0	0	0.152819	0	0.140476	0	0	0	0.0828915
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR013083Znf_RING/FYVE/PHD
IPR011011Znf_FYVE_PHD
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00045429 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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