TCONS_00045427 (transcript) - C. hemisphaerica

Overview
NameTCONS_00045427
Unique NameTCONS_00045427
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length714

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00045427 ID=TCONS_00045427|Name=TCONS_00045427|organism=Clytia hemisphaerica|type=transcript|length=714bp
CAAAGACTAATCAAGCAATCCTGCACAAAGACTAATCAAGCAATCCTGCA
CAAAGACTAATCAAGCATCCTGCACAAAGACTAATCAAGTAATCCTGCAC
AAAGACTAATCAAGCAATTCTGCACAAAGACTAATCAAGCAATCCTGCAC
AAAGACTAACCAAGCAATCCTGCACAAAGGCTAATCAAGCAATCCTGCAC
AAAGACTAATCAAGTAATCCTGCACAAAGACTAATCAAGCAATTCTGCAC
AAAGACTAATCAAGCAATTCTGCACAAAGACTAATCAAGCAATTCTGCAC
AAAGGCTAATCAAGCAATCCTGCACAAAGACTAATCAAGTAATCCTGCAC
AAAGACTAATCAAGCAATTCTGCACAAAGACTAATCAAGCAATTCTGCAC
AAAGACTAATCAAGCAATTCTGCACAAAGGCTAATCAAGCAATCCTGCAC
AAAGACTAATCAAGTAATCCTGCACAAAGACTAATCAAGCAATTCTGCAC
AAAGACTAATCAAGCAATTCTGCACAAAGACTAATCAAGCAATCCTGCAC
AAAGACTAATCAAGCAATTCTGCACAAAGACTAACCAAGCAATCCTGCAC
AAAGACTAACCAAGCAATCCTGCACAAAGACTAACCAAGCAATCCTGCAC
AAAGACTAATCAAGCAATTCTGCACAAAGACTAATCAAGCAATTCTGCAC
AAAGACTAATCAAG
Run BLAST on NCBI

transcript from alignment at sc0007788:13..726

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00045427 ID=TCONS_00045427|Name=TCONS_00045427|organism=Clytia hemisphaerica|type=transcript|length=714bp|location=Sequence derived from alignment at sc0007788:13..726 (Clytia hemisphaerica)
CTTGATTAGTCTTTGTGCAGAATTGCTTGATTAGTCTTTGTGCAGAATTG
CTTGATTAGTCTTTGTGCAGGATTGCTTGGTTAGTCTTTGTGCAGGATTG
CTTGGTTAGTCTTTGTGCAGGATTGCTTGGTTAGTCTTTGTGCAGAATTG
CTTGATTAGTCTTTGTGCAGGATTGCTTGATTAGTCTTTGTGCAGAATTG
CTTGATTAGTCTTTGTGCAGAATTGCTTGATTAGTCTTTGTGCAGGATTA
CTTGATTAGTCTTTGTGCAGGATTGCTTGATTAGCCTTTGTGCAGAATTG
CTTGATTAGTCTTTGTGCAGAATTGCTTGATTAGTCTTTGTGCAGAATTG
CTTGATTAGTCTTTGTGCAGGATTACTTGATTAGTCTTTGTGCAGGATTG
CTTGATTAGCCTTTGTGCAGAATTGCTTGATTAGTCTTTGTGCAGAATTG
CTTGATTAGTCTTTGTGCAGAATTGCTTGATTAGTCTTTGTGCAGGATTA
CTTGATTAGTCTTTGTGCAGGATTGCTTGATTAGCCTTTGTGCAGGATTG
CTTGGTTAGTCTTTGTGCAGGATTGCTTGATTAGTCTTTGTGCAGAATTG
CTTGATTAGTCTTTGTGCAGGATTACTTGATTAGTCTTTGTGCAGGATGC
TTGATTAGTCTTTGTGCAGGATTGCTTGATTAGTCTTTGTGCAGGATTGC
TTGATTAGTCTTTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_029005XLOC_029005Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00045427-exon-sc0007788-1491911889:13..726TCONS_00045427-exon-sc0007788-1491911889:13..726Clytia hemisphaericaexon
TCONS_00045427-exon-sc0007788-1510915933:13..726TCONS_00045427-exon-sc0007788-1510915933:13..726Clytia hemisphaericaexon
TCONS_00045427-exon-sc0007788-1575043694:13..726TCONS_00045427-exon-sc0007788-1575043694:13..726Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0007788supercontigsc0007788:13..726 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.12405	0.8906	0.477264	1.55643	0.09474	0.14973	0.0903213	0.169115	0.414406	0.0733298	0	0.327517	0	0.145567	0.239352	0.299671	0.210955	0.216222	0.149361	0.468886	0.271698	0.596362	0.161101	0.292929	0.150855	0.74049	0.481654	0	0.155951	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00045427 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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