TCONS_00045397 (transcript) - C. hemisphaerica

Overview
NameTCONS_00045397
Unique NameTCONS_00045397
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length312

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00045397 ID=TCONS_00045397|Name=TCONS_00045397|organism=Clytia hemisphaerica|type=transcript|length=312bp
TCTTATTCGATTCTTATTCAGTTTGGTGAACGCAATaactttgtaaaagt
tttaaagaaacaATCTTGAAAATGAAGGGTATATTctacattttttcaac
tttttgtgtCTTTGCATTTCTCCATGGTCATCCCTTGGAACAGGGCGAAG
AAGAATCAGCAtttgaaaatatcaacaaagCAAATCAAGATCTCCCAATT
GATCTTGAGCAAGGAGATATGATGATACTTCAAGATGGCGCAGTTGACAA
GAAATACAACCGTTATTGGAAAGATGGTTATGTCCCTTACACCATATCTA
ATCAATTTGGTA
Run BLAST on NCBI

transcript from alignment at sc0007719:106..768-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00045397 ID=TCONS_00045397|Name=TCONS_00045397|organism=Clytia hemisphaerica|type=transcript|length=663bp|location=Sequence derived from alignment at sc0007719:106..768- (Clytia hemisphaerica)
TCTTATTCGATTCTTATTCAGTTTGGTGAACGCAATAACTTTGTAAAAGT
TTTAAAGAAACAATCTTGAAAATGAAGGGTATATTCTACATTTTTTCAAC
TTTTTGTGTCTTTGCATTTCTCCATGGTCATCCCTTGGAACAGGGCGAAG
AAGAATCAGCATTTGAAAATATCAACAAAGCAAATCAAGGTTTGTAAATC
TTATCTTTTGAATTTTTTGCTTTTGATTTTTTCCCATCATTTTTGCATAC
CAATTAAGCTTTAAATTACGGAGCCAGTATTGTGCTGATTTTGAAAATTC
TGAAATTTCAGCACCATTAAGGATTACCTTGCAAACAAGTCTCACATGCT
ACCTCTAAAAGCTAAACCATTGGCAAAGGCTTGGTGAAGTGACACCGGGC
TTGACCCTAAGACTTTTTTTATGAGAAAGAGTCACCTTAAAGACTTCGTC
AGTCAGGAAGAACTTAAACTTAACTTAAACTTAACTTAAAGATTTATAAT
TCTACATAATTCCAATGACCTTGCTGTTTTTCTTCCATAGATCTCCCAAT
TGATCTTGAGCAAGGAGATATGATGATACTTCAAGATGGCGCAGTTGACA
AGAAATACAACCGTTATTGGAAAGATGGTTATGTCCCTTACACCATATCT
AATCAATTTGGTA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_028977XLOC_028977Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00045397-exon-sc0007719-1575043694:580..768TCONS_00045397-exon-sc0007719-1575043694:580..768Clytia hemisphaericaexon
TCONS_00045397-exon-sc0007719-1575043694:106..228TCONS_00045397-exon-sc0007719-1575043694:106..228Clytia hemisphaericaexon
TCONS_00045397-exon-sc0007719-1510915933:580..768TCONS_00045397-exon-sc0007719-1510915933:580..768Clytia hemisphaericaexon
TCONS_00045397-exon-sc0007719-1510915933:106..228TCONS_00045397-exon-sc0007719-1510915933:106..228Clytia hemisphaericaexon
TCONS_00045397-exon-sc0007719-1491911889:580..768TCONS_00045397-exon-sc0007719-1491911889:580..768Clytia hemisphaericaexon
TCONS_00045397-exon-sc0007719-1491911889:106..228TCONS_00045397-exon-sc0007719-1491911889:106..228Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0007719supercontigsc0007719:106..768 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.335773	0	0.381422	0.464345	0	0	1.24332	0	0.359408	0	0	1.37401	1.1891	6.06113	50.1478	36.4464	8.47805	0	0	0.66583	0	0	0.35893	0	0	5.66569	4.53494	1.14653	0.389377
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00045397 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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