TCONS_00045385 (transcript) - C. hemisphaerica

Overview
NameTCONS_00045385
Unique NameTCONS_00045385
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length287

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00045385 ID=TCONS_00045385|Name=TCONS_00045385|organism=Clytia hemisphaerica|type=transcript|length=287bp
ATTCAACATTATCTCACGAAAGAATCATCAAAGTCACCTTTGTTGGTTTA
AAGCCCTTGACACATTATGAATTCCGTGTTCGCGCAGTGAATCCAACGGG
AACAGGGCTTTGGTCACCTCCATCGAAAACTAGAACAACAGctAAGCCAA
CACCCAAACCTACCACAACTGACCCTAGATCTGGCGAAACTACGACCTCA
ACACGGCGTCCAAAACCAACTATGGAGCCAGCGGAGAGTTCATCAGGTCT
TTCGAATAACGAGAAAGTTGGTGTTGCAGTGGCAATT
Run BLAST on NCBI

transcript from alignment at sc0007675:2..787-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00045385 ID=TCONS_00045385|Name=TCONS_00045385|organism=Clytia hemisphaerica|type=transcript|length=786bp|location=Sequence derived from alignment at sc0007675:2..787- (Clytia hemisphaerica)
ATTCAACATTATCTCACGAAAGAATCATCAAAGTCACCTTTGTTGGTTTA
AAGCCCTTGACACATTATGAATTCCGTGTTCGCGCAGTGAATCCAACGGG
AACAGGGCTTTGGTCACCTCCATCGAAAACTAGAACAACAGGTATTAATA
TTTCTTTTCAACAAATTTTACTCTGTGCTCTATTTTTACCACTACCATGA
GTTTTTTAAGATCCACTACTTGCTGATATAAGTTTTTTAAGACTGTAAGA
CTTTACAGCAAAAACAAGATTCTTTGAGAGCTTTCCTCTCAGGACCTCCT
TTGTGATGACTCATAAGAGCCATCGAGCCATCCTTTGAAGAGGCTAATTT
TGGTGAGAATCAATTTTAGCGATTTTGGTGAGTTTTGTAGAAGTCTCTAG
CTNGTCCTTTGAAAGGACTAATTTTAGTGAGAATTAATTTTAGCAATTTT
GGTGAGTTTTGAAGAAGTCTGCGCCTAAATTGGTTCTCGCTAAAATTGAA
AAAATTGCTTCCTCGCAAAATGTTAGTTCTCTCTCAAAATTAAAAAAAGC
GTCAATCTCTAAAGTTTCACCTCGCCAAATTTATAAAGAATCAATCAGAG
AGGGTAGCCGTATAACCCAAAATCAATTTAAATTTTTCAGCTAAGCCAAC
ACCCAAACCTACCACAACTGACCCTAGATCTGGCGAAACTACGACCTCAA
CACGGCGTCCAAAACCAACTATGGAGCCAGCGGAGAGTTCATCAGGTCTT
TCGAATAACGAGAAAGTTGGTGTTGCAGTGGCAATT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_028965XLOC_028965Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00045385-exon-sc0007675-1575043694:647..787TCONS_00045385-exon-sc0007675-1575043694:647..787Clytia hemisphaericaexon
TCONS_00045385-exon-sc0007675-1575043694:2..147TCONS_00045385-exon-sc0007675-1575043694:2..147Clytia hemisphaericaexon
TCONS_00045385-exon-sc0007675-1510915933:647..787TCONS_00045385-exon-sc0007675-1510915933:647..787Clytia hemisphaericaexon
TCONS_00045385-exon-sc0007675-1510915933:2..147TCONS_00045385-exon-sc0007675-1510915933:2..147Clytia hemisphaericaexon
TCONS_00045385-exon-sc0007675-1491911889:647..787TCONS_00045385-exon-sc0007675-1491911889:647..787Clytia hemisphaericaexon
TCONS_00045385-exon-sc0007675-1491911889:2..147TCONS_00045385-exon-sc0007675-1491911889:2..147Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0007675supercontigsc0007675:2..787 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.35826	0.346101	0	0	0	0.759917	0	1.0588	15.9828	12.3144	1.77131	39.5355	1.18334	1.01049	7.7237	3.38335	11.8826	18.2571	0.0416817	0.256394	0.192732	0	0	0.285447	0	0.372298	0	0	0.314863	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00045385 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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