TCONS_00045321 (transcript) - C. hemisphaerica

Overview
NameTCONS_00045321
Unique NameTCONS_00045321
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length343

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00045321 ID=TCONS_00045321|Name=TCONS_00045321|organism=Clytia hemisphaerica|type=transcript|length=343bp
GGTTACCCAAAATCCTTGGCGAAGAAAATTTCCAACAATACCATGCGTAC
TTTGATACTTTCAAACACAATCACAAAGCTCACAGTACAATAGCTTATGC
GCGTTTAGGTGCTTCATTGGAGAGAGTTAAACGGCACTGCAGTGCACAAA
ACGCAAGagGTGGTTTGATCCCTTACAACAAAGAGGAGCCATTAACGCAA
AAAACTGAACTCGACTCCTTGAAATCAGACAATATTCAAGATTACATGGG
CGAGAATGAAGCATACTACAAAGTGTTAAATCATTTTGCTAACCTTTACG
AAACGAAATATGGTAAAGATATTAAGAAGATGATCAAGGAAGA
Run BLAST on NCBI

protein sequence of TCONS_00045321-protein

>TCONS_00045321-protein ID=TCONS_00045321-protein|Name=TCONS_00045321-protein|organism=Clytia hemisphaerica|type=polypeptide|length=113bp
LPKILGEENFQQYHAYFDTFKHNHKAHSTIAYARLGASLERVKRHCSAQN
ARGGLIPYNKEEPLTQKTELDSLKSDNIQDYMGENEAYYKVLNHFANLYE
TKYGKDIKKMIKE
Run BLAST on NCBI

transcript from alignment at sc0007503:1..882+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00045321 ID=TCONS_00045321|Name=TCONS_00045321|organism=Clytia hemisphaerica|type=transcript|length=882bp|location=Sequence derived from alignment at sc0007503:1..882+ (Clytia hemisphaerica)
GGTTACCCAAAATCCTTGGCGAAGAAAATTTCCAACAATACCATGCGTAC
TTTGATACTTTCAAACACAATCACAAAGCTCACAGTACAATAGCTTATGC
GCGTTTAGGTGCTTCATTGGAGAGAGTTAAACGGCACTGCAGTGCACAAA
ACGCAAGGTAAGTTTTTGTTGGTTTTGTTATTATAAGATTTAGAGAAAGT
TTTAGAGAAAGATCTAATTaggatcaaaagaaatctttcacCAAAAACCT
GAAATTATCAATTCATATATCCCAAGTAAGTCCAAAATACGGGTTTGACG
GTGTGACGTTATTAGTCCGTTTTCCCTTTGGGgcttcagaaaaaaaactg
agGATATTTTCGGTGTCGGTGTCGGTGTggattttagcaatttttgcggG
CGGCTTTGCCGGTGATTCAGAAGAATGCATTAGTATTTTGGCGTTTCTGA
TCCCGTACACCCCTTTAAAAACATTTGCTAATTTGACTCAAATTAAGCGT
AATTCTCTGGACCAGCATAACCAATTCGAAAGTGTAGGGGCAAAAAGACT
ATAAAATGTTGTTGGAGGCCTGTCTTGACAAGATGAAAGGGCAAAATAGG
TTGATAAAAGGTGAGACAGGGTTCTGAAATCGTGTAAGCTTGCTTAGTTC
TTGCGAGTGCTATAAATAtcgtatttttctttgtttgtttttttagagGT
GGTTTGATCCCTTACAACAAAGAGGAGCCATTAACGCAAAAAACTGAACT
CGACTCCTTGAAATCAGACAATATTCAAGATTACATGGGCGAGAATGAAG
CATACTACAAAGTGTTAAATCATTTTGCTAACCTTTACGAAACGAAATAT
GGTAAAGATATTAAGAAGATGATCAAGGAAGA

Coding sequence (CDS) from alignment at sc0007503:1..882+

>TCONS_00045321 ID=TCONS_00045321|Name=TCONS_00045321|organism=Clytia hemisphaerica|type=CDS|length=678bp|location=Sequence derived from alignment at sc0007503:1..882+ (Clytia hemisphaerica)
TTACCCAAAATCCTTGGCGAAGAAAATTTCCAACAATACCATGCGTACTT
TGATACTTTCAAACACAATCACAAAGCTCACAGTACAATAGCTTATGCGC
GTTTAGGTGCTTCATTGGAGAGAGTTAAACGGCACTGCAGTGCACAAAAC
GCAAGagGTGGTTTGATCCCTTACAACAAAGAGGAGCCATTAACGCAAAA
AACTGAACTCGACTCCTTGAAATCAGACAATATTCAAGATTACATGGGCG
AGAATGAAGCATACTACAAAGTGTTAAATCATTTTGCTAACCTTTACGAA
ACGAAATATGGTAAAGATATTAAGAAGATGATCAAGGAATTACCCAAAAT
CCTTGGCGAAGAAAATTTCCAACAATACCATGCGTACTTTGATACTTTCA
AACACAATCACAAAGCTCACAGTACAATAGCTTATGCGCGTTTAGGTGCT
TCATTGGAGAGAGTTAAACGGCACTGCAGTGCACAAAACGCAAGagGTGG
TTTGATCCCTTACAACAAAGAGGAGCCATTAACGCAAAAAACTGAACTCG
ACTCCTTGAAATCAGACAATATTCAAGATTACATGGGCGAGAATGAAGCA
TACTACAAAGTGTTAAATCATTTTGCTAACCTTTACGAAACGAAATATGG
TAAAGATATTAAGAAGATGATCAAGGAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_028902XLOC_028902Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00045321-proteinTCONS_00045321-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00045321-exon-sc0007503-1491911889:1..157TCONS_00045321-exon-sc0007503-1491911889:1..157Clytia hemisphaericaexon
TCONS_00045321-exon-sc0007503-1510915933:1..157TCONS_00045321-exon-sc0007503-1510915933:1..157Clytia hemisphaericaexon
TCONS_00045321-exon-sc0007503-1575043694:1..157TCONS_00045321-exon-sc0007503-1575043694:1..157Clytia hemisphaericaexon
TCONS_00045321-exon-sc0007503-1491911889:697..882TCONS_00045321-exon-sc0007503-1491911889:697..882Clytia hemisphaericaexon
TCONS_00045321-exon-sc0007503-1510915933:697..882TCONS_00045321-exon-sc0007503-1510915933:697..882Clytia hemisphaericaexon
TCONS_00045321-exon-sc0007503-1575043694:697..882TCONS_00045321-exon-sc0007503-1575043694:697..882Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0007503supercontigsc0007503:1..882 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
198.826	221.392	224.23	216.876	61.9412	55.727	52.7832	65.6455	71.8729	57.9248	103.839	76.5506	420.175	451.517	139.194	133.643	302.986	326.406	767.475	639.153	122.36	123.986	100.48	112.878	83.5722	86.2561	223.63	184.031	89.3337	70.0591
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00045321 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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