TCONS_00045316 (transcript) - C. hemisphaerica

Overview
NameTCONS_00045316
Unique NameTCONS_00045316
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length889

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00045316 ID=TCONS_00045316|Name=TCONS_00045316|organism=Clytia hemisphaerica|type=transcript|length=889bp
ACTACGATGCGAAGGGTGAGATTAAACAGAACATCTTAAACTTGACAGCA
AACAGCCTAAATAATCCTTGACATGACACTAATGACCAAATAATGTCCCa
ctccattttatatccatttcagggggtggacgaacatttccagagggtta
tccgagaaaaatttccagggggttttgtttcatttttccaagggattaaa
aagttattctaaaatttccaggtggtaaaagactgattttagttcgtcca
cccttacTTTAAGATATCAaatgtatggttttttaatggaacagcccaat
attGACGCTAACTTTGTTGTGACAAAATTAATGACATTGTGACCAATCAT
CTTGTGACAATTTCACGTTGACTCTTATTCAAGTACTTCCCATTAAGTAA
CATGTCGAGCCTCTTTTTAGAGTAAGCAAACTTTTAAGAATAAATATCAC
GAGTGTTCATTTTGAATCGTTTGGTATAGTAGCAGCATATGGCTTATCGT
AAGCgatcatttattttttcccatttttatggataacagttgactctcgc
ttattcgaatttGCACCTTTTCTACCGTAGCCGCTAATTGCCGCGttggc
atttttttgtccgtttagCCACCCTAAAACCACCCCAGTCTTTTTCTCgc
acataaagacaatagaaaaaagtgtaaaaagaggattggatcaagtttag
ggtggtaaattaaattataaacaatcgaaaaggtgtatttgtaCTTTTGT
AATTTGTAATTAATTGCTTGAATATGCGAGGGTCTAGTATCATCAGAAag
tctaaatttttaatctagTTTTTATTTTACAATAAGCAATAATTATAAGC
AGAGGGGATAATCTTTGGCTGGCTTTTCCCTGAAAAGTT
Run BLAST on NCBI

transcript from alignment at sc0007486:1..889

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00045316 ID=TCONS_00045316|Name=TCONS_00045316|organism=Clytia hemisphaerica|type=transcript|length=889bp|location=Sequence derived from alignment at sc0007486:1..889 (Clytia hemisphaerica)
AACTTTTCAGGGAAAAGCCAGCCAAAGATTATCCCCTCTGCTTATAATTA
TTGCTTATTGTAAAATAAAAActagattaaaaatttagactTTCTGATGA
TACTAGACCCTCGCATATTCAAGCAATTAATTACAAATTACAAAAGtaca
aatacaccttttcgattgtttataatttaatttaccaccctaaacttgat
ccaatcctctttttacacttttttctattgtctttatgtgcGAGAAAAAG
ACTGGGGTGGTTTTAGGGTGGctaaacggacaaaaaaatgccaaCGCGGC
AATTAGCGGCTACGGTAGAAAAGGTGCaaattcgaataagcgagagtcaa
ctgttatccataaaaatgggaaaaaataaatgatcGCTTACGATAAGCCA
TATGCTGCTACTATACCAAACGATTCAAAATGAACACTCGTGATATTTAT
TCTTAAAAGTTTGCTTACTCTAAAAAGAGGCTCGACATGTTACTTAATGG
GAAGTACTTGAATAAGAGTCAACGTGAAATTGTCACAAGATGATTGGTCA
CAATGTCATTAATTTTGTCACAACAAAGTTAGCGTCaatattgggctgtt
ccattaaaaaaccatacattTGATATCTTAAAgtaagggtggacgaacta
aaatcagtcttttaccacctggaaattttagaataactttttaatccctt
ggaaaaatgaaacaaaaccccctggaaatttttctcggataaccctctgg
aaatgttcgtccaccccctgaaatggatataaaatggagtGGGACATTAT
TTGGTCATTAGTGTCATGTCAAGGATTATTTAGGCTGTTTGCTGTCAAGT
TTAAGATGTTCTGTTTAATCTCACCCTTCGCATCGTAGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_028897XLOC_028897Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00045316-exon-sc0007486-1491911889:1..889TCONS_00045316-exon-sc0007486-1491911889:1..889Clytia hemisphaericaexon
TCONS_00045316-exon-sc0007486-1510915933:1..889TCONS_00045316-exon-sc0007486-1510915933:1..889Clytia hemisphaericaexon
TCONS_00045316-exon-sc0007486-1575043694:1..889TCONS_00045316-exon-sc0007486-1575043694:1..889Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0007486supercontigsc0007486:1..889 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.54237	1.11347	0.762836	1.07632	6.96144	3.556	18.7621	21.4621	4.87367	5.24617	4.74486	3.51875	2.77391	2.55639	2.4703	2.71767	4.39362	3.92935	1.74242	4.40995	6.60247	7.59261	4.95439	6.23224	1.5494	3.26264	6.42422	7.04906	10.4361	8.07966
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00045316 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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