TCONS_00045300 (transcript) - C. hemisphaerica

Overview
NameTCONS_00045300
Unique NameTCONS_00045300
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length228

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00045300 ID=TCONS_00045300|Name=TCONS_00045300|organism=Clytia hemisphaerica|type=transcript|length=228bp
CTTGTTTATTCAGctttacaagagaaaaacttGTATGCTTTGAACGTTTG
GAAGCGAGTCAAGGCTAAACTAGAAGGTCGCGAATTGGATGTCAACACAA
GGTCTTCTGTGGTCGATCAGGTCGGTCGGGTGATTGACGATGCAATTAGC
CTGGACAACTTGTGTCAGTTGTACGAAGGCTGGACTCCATGGGTGTGATA
CGTGACGATGATGTGGTTTCAGTCTAAA
Run BLAST on NCBI

transcript from alignment at sc0007452:30..920+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00045300 ID=TCONS_00045300|Name=TCONS_00045300|organism=Clytia hemisphaerica|type=transcript|length=891bp|location=Sequence derived from alignment at sc0007452:30..920+ (Clytia hemisphaerica)
CTTGTTTATTCAGctttacaagagaaaaacttGTATGCTTTGAACGTTTG
GAAGCGAGTCAAGGCTAAACTAGAAGGTCGCGAATTGGATGTCAACACAA
GGTCTTCTGTGGTCGATCAGGTTTGATTATATGAGGATTTTTCTGGAGAA
CTCCACTGTCTACTCCCCTTAAAATTGAAGTACTAAAGTGTTCTATAAGT
AAGTCtgtgaccgcagtcggaggcgacccgaaggctcctctttcgatagc
tatctacccgaaggtaggggagggcgctgCTCTTTCtccagcaattaaga
gaaggatcaagggtacgtccttctcttaattactgagcatcaagcagaga
ggcatcaagtacccacgagtggggattgaacccacaaccttgcgcaccgt
agttggatgctctaccactgcactatggTCGCTAAAGTGCTTCATAGCAA
AGCAACTGAAAGAGGGAACTTACTATtgtaaattatatttttgaaggCCC
ACTGGAGATGTGAGTTCGAATCCAGTCCGGGTCAccaagttttatatttt
ttattttttgatgtgttgaaaaaaaatttccgttaTCGCAAAAAATACGA
ATAGTGAAACTCCACTAATATAAAGTAACTATGATTGCAGTTTTCGTAGA
ATTAAGAATTTTCAGGAAGATATTTATGACTTTCCCGGCTTCTTTTAATT
GGGCtttaaaacattcaactaaGTGAGTATATATGAGTTCGGGACATCCC
TATTTACTAAACTAGACACAATTTCTACTTTAGGTCGGTCGGGTGATTGA
CGATGCAATTAGCCTGGACAACTTGTGTCAGTTGTACGAAGGCTGGACTC
CATGGGTGTGATACGTGACGATGATGTGGTTTCAGTCTAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_028881XLOC_028881Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00045300-exon-sc0007452-1491911889:30..149TCONS_00045300-exon-sc0007452-1491911889:30..149Clytia hemisphaericaexon
TCONS_00045300-exon-sc0007452-1510915933:30..149TCONS_00045300-exon-sc0007452-1510915933:30..149Clytia hemisphaericaexon
TCONS_00045300-exon-sc0007452-1575043694:30..149TCONS_00045300-exon-sc0007452-1575043694:30..149Clytia hemisphaericaexon
TCONS_00045300-exon-sc0007452-1491911889:813..920TCONS_00045300-exon-sc0007452-1491911889:813..920Clytia hemisphaericaexon
TCONS_00045300-exon-sc0007452-1510915933:813..920TCONS_00045300-exon-sc0007452-1510915933:813..920Clytia hemisphaericaexon
TCONS_00045300-exon-sc0007452-1575043694:813..920TCONS_00045300-exon-sc0007452-1575043694:813..920Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0007452supercontigsc0007452:30..920 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
7.63369	2.12687	3.70425	0	30.8834	17.4318	11.2164	18.3761	4.59483	18.2126	8.8388	7.98914	8.70331	8.28526	4.9539	2.65815	11.4612	15.1037	1.15925	6.06538	9.48946	13.8859	10.003	7.95742	17.5628	17.7643	8.97198	7.97928	7.2624	13.5653
Blast
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BLAST of TCONS_00045300 vs. Swiss-Prot (Human)
Match: SMG1 (Serine/threonine-protein kinase SMG1 OS=Homo sapiens GN=SMG1 PE=1 SV=3)

HSP 1 Score: 87.4261 bits (215), Expect = 6.852e-21
Identity = 41/61 (67.21%), Postives = 50/61 (81.97%), Query Frame = 1 
Query:   13 ALQEKNLYALNVWKRVKAKLEGRELDVNTRSSVVDQVGRVIDDAISLDNLCQLYEGWTPWV 195
            A+QE+N YA++VWKRVKAKLEGR++D N R SV +QV  VI +A +LDNL QLYEGWT WV
Sbjct: 3601 AVQERNSYAVSVWKRVKAKLEGRDVDPNRRMSVAEQVDYVIKEATNLDNLAQLYEGWTAWV 3661
The following BLAST results are available for this feature:
BLAST of TCONS_00045300 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
SMG16.852e-2167.21Serine/threonine-protein kinase SMG1 OS=Homo sapie... [more]
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