TCONS_00045293 (transcript) - C. hemisphaerica

Overview
NameTCONS_00045293
Unique NameTCONS_00045293
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length275

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00045293 ID=TCONS_00045293|Name=TCONS_00045293|organism=Clytia hemisphaerica|type=transcript|length=275bp
ACCGTGATACCAGCAGGGGTCATTTAACTGTCTTCGCCTATTTTCCCATG
TTTGTCGACGTATTCTTATGAATGTCTATAGAACATTCGCATGACATCCT
CTTCAGGCACCAAATGATAATACATCCTTTCTTTTATTGTAGGCCAACTG
ATGTTTATTATCGCATCAGCATTGTGGCTGTCGAGAAAAAGAGAAATGGA
AATGCAATAGAATTCTTTTTATGATTCATTCACAAAAGAAAACATGTCTA
AATAGTATGACGTACTTACTTCCGC
Run BLAST on NCBI

transcript from alignment at sc0007435:36..310

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00045293 ID=TCONS_00045293|Name=TCONS_00045293|organism=Clytia hemisphaerica|type=transcript|length=275bp|location=Sequence derived from alignment at sc0007435:36..310 (Clytia hemisphaerica)
GCGGAAGTAAGTACGTCATACTATTTAGACATGTTTTCTTTTGTGAATGA
ATCATAAAAAGAATTCTATTGCATTTCCATTTCTCTTTTTCTCGACAGCC
ACAATGCTGATGCGATAATAAACATCAGTTGGCCTACAATAAAAGAAAGG
ATGTATTATCATTTGGTGCCTGAAGAGGATGTCATGCGAATGTTCTATAG
ACATTCATAAGAATACGTCGACAAACATGGGAAAATAGGCGAAGACAGTT
AAATGACCCCTGCTGGTATCACGGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_028874XLOC_028874Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00045293-exon-sc0007435-1491911889:36..310TCONS_00045293-exon-sc0007435-1491911889:36..310Clytia hemisphaericaexon
TCONS_00045293-exon-sc0007435-1510915933:36..310TCONS_00045293-exon-sc0007435-1510915933:36..310Clytia hemisphaericaexon
TCONS_00045293-exon-sc0007435-1575043694:36..310TCONS_00045293-exon-sc0007435-1575043694:36..310Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0007435supercontigsc0007435:36..310 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.05715	1.54633	0.598477	0	4.98967	1.68982	1.35913	1.9086	0.890836	0.551722	0.535515	1.40811	1.40615	2.19045	0.600282	0.322097	0	0	2.24754	0	0	0	0	1.10198	2.27002	4.55836	0	2.32051	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00045293 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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