TCONS_00045283 (transcript) - C. hemisphaerica

Overview
NameTCONS_00045283
Unique NameTCONS_00045283
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length725

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00045283 ID=TCONS_00045283|Name=TCONS_00045283|organism=Clytia hemisphaerica|type=transcript|length=725bp
CGGCACTTTCTTGTTTGAAACGATTCTGGAGTACAGGTAGGATAATGTTG
AGAAGATAAGGGatcaaaagaaatttcagacaaaagaatatattttcaat
ttgtttcCATGGTAACTCTTTTGATTATTGATAAGTTTAAAAACTGGTCG
AGTATAAAAAANATGGACGGCATGGTAACTCTTTTGATTATTGATAAGTT
TAAAAACTGGTCgagtataaaaaagaaaaacctgaAGAGAGAGCAGTGTG
TGCACAAAACAAAATGCATGTAAGTAAAATCTTAGTATATAAAAAGTGCA
AAATTAATTAAGGTAAATAGTAATTCGtaggtaaaaaatattttttatta
caaacacAATGAAAGGGACAAAGCTGGGACTACATAAACACAAATACTGC
TAACTGCTCTGACTTCAagatttctctcaaatctacttcgactaaaaagt
aaaatatcttttcattaTCTAAATGACTTGCACTAGCCTCTTCAACATAC
GACTGGTCTTGTTCCCAACATTTGTCAAAAGTCCACAGGGTTGAAAGAGT
AACTTGAGAAACCTCctgtaaaaaaagtttgaaatgttACTTGAACCCCT
TTcagttgttttcaaaattttaaactcGTGCCACTGAAGATACTTTGTTG
AGGCTTACTATTAGAGAAAACACAAAATGGGCTCTTCCtgaaaaaattgt
acatggggggggggggggggggggg
Run BLAST on NCBI

transcript from alignment at sc0007398:1..725

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00045283 ID=TCONS_00045283|Name=TCONS_00045283|organism=Clytia hemisphaerica|type=transcript|length=725bp|location=Sequence derived from alignment at sc0007398:1..725 (Clytia hemisphaerica)
cccccccccccccccccccccatgtacaattttttcaGGAAGAGCCCATT
TTGTGTTTTCTCTAATAGTAAGCCTCAACAAAGTATCTTCAGTGGCACga
gtttaaaattttgaaaacaactgAAAGGGGTTCAAGTaacatttcaaact
ttttttacagGAGGTTTCTCAAGTTACTCTTTCAACCCTGTGGACTTTTG
ACAAATGTTGGGAACAAGACCAGTCGTATGTTGAAGAGGCTAGTGCAAGT
CATTTAGAtaatgaaaagatattttactttttagtcgaagtagatttgag
agaaatctTGAAGTCAGAGCAGTTAGCAGTATTTGTGTTTATGTAGTCCC
AGCTTTGTCCCTTTCATTgtgtttgtaataaaaaatattttttacctaCG
AATTACTATTTACCTTAATTAATTTTGCACTTTTTATATACTAAGATTTT
ACTTACATGCATTTTGTTTTGTGCACACACTGCTCTCTCTtcaggttttt
cttttttatactcGACCAGTTTTTAAACTTATCAATAATCAAAAGAGTTA
CCATGCCGTCCATNTTTTTTATACTCGACCAGTTTTTAAACTTATCAATA
ATCAAAAGAGTTACCATGgaaacaaattgaaaatatattcttttgtctga
aatttcttttgatCCCTTATCTTCTCAACATTATCCTACCTGTACTCCAG
AATCGTTTCAAACAAGAAAGTGCCG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_028864XLOC_028864Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00045283-exon-sc0007398-1491911889:1..725TCONS_00045283-exon-sc0007398-1491911889:1..725Clytia hemisphaericaexon
TCONS_00045283-exon-sc0007398-1510915933:1..725TCONS_00045283-exon-sc0007398-1510915933:1..725Clytia hemisphaericaexon
TCONS_00045283-exon-sc0007398-1575043694:1..725TCONS_00045283-exon-sc0007398-1575043694:1..725Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0007398supercontigsc0007398:1..725 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
26.5396	25.3439	52.859	61.8439	344.549	218.927	151.068	162.779	70.3956	71.6948	63.0408	57.5589	51.8544	53.329	49.4266	52.1206	58.6855	57.9817	20.1724	29.216	76.1156	75.5825	36.8941	35.1905	30.4875	46.6446	42.7076	46.4842	27.0911	24.336
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00045283 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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