TCONS_00045279 (transcript) - C. hemisphaerica

Overview
NameTCONS_00045279
Unique NameTCONS_00045279
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length298

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00045279 ID=TCONS_00045279|Name=TCONS_00045279|organism=Clytia hemisphaerica|type=transcript|length=298bp
ctcaaggtaaatgacttACCAGACGTGCGGCATTAAGGTTCGGTTTTTCA
AGGTTCAGCTACTGCACCGTAGGGGTTTTTACCAGTGCTGCACTGTAACA
GTATCTTTTACCTGTACCTGGACTGTGAGGGTAGTAAATTACCTTTAAtt
actaattttcaaatgaaaagttaccttttttaaagaaaggTGCTCCAATG
AAAAGGTCTGATGAAGAGAATGATGCACTGTAAGGTCGGTTTAATTTCAT
AGCTTatttctgcactgtaagagtccgattttgaaagtcaattttggg
Run BLAST on NCBI

transcript from alignment at sc0007393:5..302

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00045279 ID=TCONS_00045279|Name=TCONS_00045279|organism=Clytia hemisphaerica|type=transcript|length=298bp|location=Sequence derived from alignment at sc0007393:5..302 (Clytia hemisphaerica)
cccaaaattgactttcaaaatcggactcttacagtgcagaaatAAGCTAT
GAAATTAAACCGACCTTACAGTGCATCATTCTCTTCATCAGACCTTTTCA
TTGGAGCAcctttctttaaaaaaggtaacttttcatttgaaaattagtaa
TTAAAGGTAATTTACTACCCTCACAGTCCAGGTACAGGTAAAAGATACTG
TTACAGTGCAGCACTGGTAAAAACCCCTACGGTGCAGTAGCTGAACCTTG
AAAAACCGAACCTTAATGCCGCACGTCTGGTaagtcatttaccttgag
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_028860XLOC_028860Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00045279-exon-sc0007393-1491911889:5..302TCONS_00045279-exon-sc0007393-1491911889:5..302Clytia hemisphaericaexon
TCONS_00045279-exon-sc0007393-1510915933:5..302TCONS_00045279-exon-sc0007393-1510915933:5..302Clytia hemisphaericaexon
TCONS_00045279-exon-sc0007393-1575043694:5..302TCONS_00045279-exon-sc0007393-1575043694:5..302Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0007393supercontigsc0007393:5..302 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0.450563	0	1.07328	0.848118	3.06965	1.99181	0.670665	0.830727	0	0.530046	0.529309	2.96627	0.677883	2.78774	1.26821	1.57635	0	1.77062	0	0	0.456265	0	1.76939	3.91298	0.545649	0	0.883355	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00045279 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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