TCONS_00045258 (transcript) - C. hemisphaerica

Overview
NameTCONS_00045258
Unique NameTCONS_00045258
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length707

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00045258 ID=TCONS_00045258|Name=TCONS_00045258|organism=Clytia hemisphaerica|type=transcript|length=707bp
ccgagtttatgtatgtgtgtttttctgcaacggagacggtaaggttctaa
ttcgACTAGATCCTGACTAACTGAGGACggcggtaaatcagcacttttac
cgtcctcgattttgcggatCAAATCTGCGGGATTTTCCagatcgcttcag
tcactttaccgtcctcaaaagtgcaaatacataaactcgctattgtagCT
AAAgtcgagtctccataactcgaacctgcTCGGGGAACACacatttgttc
gagttaaggaaattttgagttactGGAGTAAAGCTTCATGAGGCATTTTT
ATACTGACGGGACTAGAAAGCTTGGAGACATTCAAGTTGTAGAGGTTTGA
TTTTAAAGATACTCTACTGTAGATGTGTTGTTTTGATTAGAGGAAATGGC
TGACGCCGATATTGTGTTGCTCTTAACCAGCTTGGGTTTCCAATGTTTGT
TGCATTGTTATTTTAATATTCTTAAAATGGATTAATTGCGAGGCCAGGTG
TCTGTTCAAGACTATCAGCAAGGAATGTTAAAAAAGGAGCCGAAAAATTT
GTCCTGAATTAAGGCATTGACTTTGATGACTGACTTCCTTATTATATctg
aaaggaaagaaagttttttcaaaacttccctCGTAACCTCCATTTATTAT
CTTCAAATATGTTTTGTCATGTTAtgtcatttttatttataatgTACTCA
ATTTGAA
Run BLAST on NCBI

transcript from alignment at sc0007326:109..815

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00045258 ID=TCONS_00045258|Name=TCONS_00045258|organism=Clytia hemisphaerica|type=transcript|length=707bp|location=Sequence derived from alignment at sc0007326:109..815 (Clytia hemisphaerica)
TTCAAATTGAGTAcattataaataaaaatgacaTAACATGACAAAACATA TTTGAAGATAATAAATGGAGGTTACGagggaagttttgaaaaaactttct ttcctttcagATATAATAAGGAAGTCAGTCATCAAAGTCAATGCCTTAAT TCAGGACAAATTTTTCGGCTCCTTTTTTAACATTCCTTGCTGATAGTCTT GAACAGACACCTGGCCTCGCAATTAATCCATTTTAAGAATATTAAAATAA CAATGCAACAAACATTGGAAACCCAAGCTGGTTAAGAGCAACACAATATC GGCGTCAGCCATTTCCTCTAATCAAAACAACACATCTACAGTAGAGTATC TTTAAAATCAAACCTCTACAACTTGAATGTCTCCAAGCTTTCTAGTCCCG TCAGTATAAAAATGCCTCATGAAGCTTTACTCCagtaactcaaaatttcc ttaactcgaacaaatgtGTGTTCCCCGAgcaggttcgagttatggagact cgacTTTAGctacaatagcgagtttatgtatttgcacttttgaggacggt aaagtgactgaagcgatctGGAAAATCCCGCAGATTTGatccgcaaaatc gaggacggtaaaagtgctgatttaccgccGTCCTCAGTTAGTCAGGATCT AGTcgaattagaaccttaccgtctccgttgcagaaaaacacacatacata aactcgg
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_028840XLOC_028840Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00045258-exon-sc0007326-1491911889:109..815TCONS_00045258-exon-sc0007326-1491911889:109..815Clytia hemisphaericaexon
TCONS_00045258-exon-sc0007326-1510915933:109..815TCONS_00045258-exon-sc0007326-1510915933:109..815Clytia hemisphaericaexon
TCONS_00045258-exon-sc0007326-1575043694:109..815TCONS_00045258-exon-sc0007326-1575043694:109..815Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0007326supercontigsc0007326:109..815 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0713832 0 0.245435 0.396335 0.0965158 0.305331 0.370144 0.171653 0.300196 0.669639 0.0722692 0.427367 1.14116 0.886261 0.607928 0.391892 0.214331 0.43992 0.227803 0.0794007 0.27611 0.202207 0.0816829 0 0.0765365 0.136687 0.293555 0.104496 0 0.0805885
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00045258 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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