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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00045226 ID=TCONS_00045226|Name=TCONS_00045226|organism=Clytia hemisphaerica|type=transcript|length=363bp aaaaccctGTTTATGGGTCACTTTCTTCATCCTTCTTGGTGAAGTTTCAG TTTGAAATTGCTTTACTTTATAAAATTCTCTTTAGGGCACTGATGATCAA CATTCCAGCTTACGAAAAGTTTAAAGCAGCCACTCTCACGTGTGGTGAAC CGCCAAACGAGACTGCAATTGACCATTTAGATGGGATAGCAAGGCGCTTT CAGCATCCAGTCTATGCAGAGCCTGAGGTGGCCTTACTTTTCCAGAAGAA TGAATTCGACACAGTGCAAATGGATGTCATTGAAGTCAACTTACTGGATG CTCTAAAAGGGaagGAGAACCAAATGGTCTTATTCAACCAAATCGCTAAC TTCTTACGAATAA Run BLAST on NCBI protein sequence of TCONS_00045226-protein >TCONS_00045226-protein ID=TCONS_00045226-protein|Name=TCONS_00045226-protein|organism=Clytia hemisphaerica|type=polypeptide|length=120bp
NPVYGSLSSSFLVKFQFEIALLYKILFRALMINIPAYEKFKAATLTCGEP PNETAIDHLDGIARRFQHPVYAEPEVALLFQKNEFDTVQMDVIEVNLLDA LKGKENQMVLFNQIANFLRI Run BLAST on NCBI transcript from alignment at sc0007244:193..1057+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00045226 ID=TCONS_00045226|Name=TCONS_00045226|organism=Clytia hemisphaerica|type=transcript|length=865bp|location=Sequence derived from alignment at sc0007244:193..1057+ (Clytia hemisphaerica) aaaaccctGTTTATGGGTCACTTTCTTCATCCTTCTTGGTGAAGTTTCAG
TTTGAAATTGCTTTACTTTATAAAATTCTCTTTAGGGCACTGATGATCAA
CATTCCAGCTTACGAAAAGTTTAAAGCAGCCACTCTCACGTGTGGTGAAC
CGCCAAACGAGACTGCAATTGACCATTTAGATGGGATAGCAAGGCGCTTT
CAGCATCCAGTCTATGCAGAGCCTGAGGTGGCCTTACTTTTCCAGAAGAA
TGAATTCGACACAGTGCAAATGGATGTCATTGAAGTCAACTTACTGGATG
CTCTAAAAGGGGTGAGATCAATGAAattatttattgttttttttacaaaa
aagataTTCTATATGAATATCTGGGTGAAAATTACCCGAATCATAAGAAt
accctaaaaatttgaaaatttataccATCATGTGTTTGATGGCGTGGTTT
AGAAAATGAAAGCTTTTAGATACAAATACCTTGATACCTAAGTCTTGACA
GAGAAATTGTAATAAATAGTCCCATAAGCGTTTACATGCCAATTGCCAAA
AATCTGAAATACGgtgaactctctctaattcgaacctctcctattcaaat
ctttctataaatcaAACTAGAATATTGATCCTCTCAGCTAGAAAGTAGTA
TAAAAtactctgtaattcgaatctttctctaattcgaagaaaaccTTAGG
TCCCTTTAAGATCGAACtaagagagtcaactgtatagtTAACGAAAATCC
CTCCCTCTACCAAACTAATATAATAAAACAGGCTAGCTTCAACTGTTatt
gtttttttacaagaagGAGAACCAAATGGTCTTATTCAACCAAATCGCTA
ACTTCTTACGAATAA Coding sequence (CDS) from alignment at sc0007244:193..1057+ >TCONS_00045226 ID=TCONS_00045226|Name=TCONS_00045226|organism=Clytia hemisphaerica|type=CDS|length=720bp|location=Sequence derived from alignment at sc0007244:193..1057+ (Clytia hemisphaerica) aaccctGTTTATGGGTCACTTTCTTCATCCTTCTTGGTGAAGTTTCAGTT TGAAATTGCTTTACTTTATAAAATTCTCTTTAGGGCACTGATGATCAACA TTCCAGCTTACGAAAAGTTTAAAGCAGCCACTCTCACGTGTGGTGAACCG CCAAACGAGACTGCAATTGACCATTTAGATGGGATAGCAAGGCGCTTTCA GCATCCAGTCTATGCAGAGCCTGAGGTGGCCTTACTTTTCCAGAAGAATG AATTCGACACAGTGCAAATGGATGTCATTGAAGTCAACTTACTGGATGCT CTAAAAGGGaagGAGAACCAAATGGTCTTATTCAACCAAATCGCTAACTT CTTACGAATAaaccctGTTTATGGGTCACTTTCTTCATCCTTCTTGGTGA AGTTTCAGTTTGAAATTGCTTTACTTTATAAAATTCTCTTTAGGGCACTG ATGATCAACATTCCAGCTTACGAAAAGTTTAAAGCAGCCACTCTCACGTG TGGTGAACCGCCAAACGAGACTGCAATTGACCATTTAGATGGGATAGCAA GGCGCTTTCAGCATCCAGTCTATGCAGAGCCTGAGGTGGCCTTACTTTTC CAGAAGAATGAATTCGACACAGTGCAAATGGATGTCATTGAAGTCAACTT ACTGGATGCTCTAAAAGGGaagGAGAACCAAATGGTCTTATTCAACCAAA TCGCTAACTTCTTACGAATA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00045226-exon-sc0007244-1491911889:193..503 | TCONS_00045226-exon-sc0007244-1491911889:193..503 | Clytia hemisphaerica | exon |
TCONS_00045226-exon-sc0007244-1510915933:193..503 | TCONS_00045226-exon-sc0007244-1510915933:193..503 | Clytia hemisphaerica | exon |
TCONS_00045226-exon-sc0007244-1575043694:193..503 | TCONS_00045226-exon-sc0007244-1575043694:193..503 | Clytia hemisphaerica | exon |
TCONS_00045226-exon-sc0007244-1491911889:1006..1057 | TCONS_00045226-exon-sc0007244-1491911889:1006..1057 | Clytia hemisphaerica | exon |
TCONS_00045226-exon-sc0007244-1510915933:1006..1057 | TCONS_00045226-exon-sc0007244-1510915933:1006..1057 | Clytia hemisphaerica | exon |
TCONS_00045226-exon-sc0007244-1575043694:1006..1057 | TCONS_00045226-exon-sc0007244-1575043694:1006..1057 | Clytia hemisphaerica | exon |
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
sc0007244 | supercontig | sc0007244:193..1057 + |
Blast
The following BLAST results are available for this feature:
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