TCONS_00045226 (transcript) - C. hemisphaerica

Overview
NameTCONS_00045226
Unique NameTCONS_00045226
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length363

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00045226 ID=TCONS_00045226|Name=TCONS_00045226|organism=Clytia hemisphaerica|type=transcript|length=363bp
aaaaccctGTTTATGGGTCACTTTCTTCATCCTTCTTGGTGAAGTTTCAG
TTTGAAATTGCTTTACTTTATAAAATTCTCTTTAGGGCACTGATGATCAA
CATTCCAGCTTACGAAAAGTTTAAAGCAGCCACTCTCACGTGTGGTGAAC
CGCCAAACGAGACTGCAATTGACCATTTAGATGGGATAGCAAGGCGCTTT
CAGCATCCAGTCTATGCAGAGCCTGAGGTGGCCTTACTTTTCCAGAAGAA
TGAATTCGACACAGTGCAAATGGATGTCATTGAAGTCAACTTACTGGATG
CTCTAAAAGGGaagGAGAACCAAATGGTCTTATTCAACCAAATCGCTAAC
TTCTTACGAATAA
Run BLAST on NCBI

protein sequence of TCONS_00045226-protein

>TCONS_00045226-protein ID=TCONS_00045226-protein|Name=TCONS_00045226-protein|organism=Clytia hemisphaerica|type=polypeptide|length=120bp
NPVYGSLSSSFLVKFQFEIALLYKILFRALMINIPAYEKFKAATLTCGEP
PNETAIDHLDGIARRFQHPVYAEPEVALLFQKNEFDTVQMDVIEVNLLDA
LKGKENQMVLFNQIANFLRI
Run BLAST on NCBI

transcript from alignment at sc0007244:193..1057+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00045226 ID=TCONS_00045226|Name=TCONS_00045226|organism=Clytia hemisphaerica|type=transcript|length=865bp|location=Sequence derived from alignment at sc0007244:193..1057+ (Clytia hemisphaerica)
aaaaccctGTTTATGGGTCACTTTCTTCATCCTTCTTGGTGAAGTTTCAG TTTGAAATTGCTTTACTTTATAAAATTCTCTTTAGGGCACTGATGATCAA CATTCCAGCTTACGAAAAGTTTAAAGCAGCCACTCTCACGTGTGGTGAAC CGCCAAACGAGACTGCAATTGACCATTTAGATGGGATAGCAAGGCGCTTT CAGCATCCAGTCTATGCAGAGCCTGAGGTGGCCTTACTTTTCCAGAAGAA TGAATTCGACACAGTGCAAATGGATGTCATTGAAGTCAACTTACTGGATG CTCTAAAAGGGGTGAGATCAATGAAattatttattgttttttttacaaaa aagataTTCTATATGAATATCTGGGTGAAAATTACCCGAATCATAAGAAt accctaaaaatttgaaaatttataccATCATGTGTTTGATGGCGTGGTTT AGAAAATGAAAGCTTTTAGATACAAATACCTTGATACCTAAGTCTTGACA GAGAAATTGTAATAAATAGTCCCATAAGCGTTTACATGCCAATTGCCAAA AATCTGAAATACGgtgaactctctctaattcgaacctctcctattcaaat ctttctataaatcaAACTAGAATATTGATCCTCTCAGCTAGAAAGTAGTA TAAAAtactctgtaattcgaatctttctctaattcgaagaaaaccTTAGG TCCCTTTAAGATCGAACtaagagagtcaactgtatagtTAACGAAAATCC CTCCCTCTACCAAACTAATATAATAAAACAGGCTAGCTTCAACTGTTatt gtttttttacaagaagGAGAACCAAATGGTCTTATTCAACCAAATCGCTA ACTTCTTACGAATAA

Coding sequence (CDS) from alignment at sc0007244:193..1057+

>TCONS_00045226 ID=TCONS_00045226|Name=TCONS_00045226|organism=Clytia hemisphaerica|type=CDS|length=720bp|location=Sequence derived from alignment at sc0007244:193..1057+ (Clytia hemisphaerica)
aaccctGTTTATGGGTCACTTTCTTCATCCTTCTTGGTGAAGTTTCAGTT
TGAAATTGCTTTACTTTATAAAATTCTCTTTAGGGCACTGATGATCAACA
TTCCAGCTTACGAAAAGTTTAAAGCAGCCACTCTCACGTGTGGTGAACCG
CCAAACGAGACTGCAATTGACCATTTAGATGGGATAGCAAGGCGCTTTCA
GCATCCAGTCTATGCAGAGCCTGAGGTGGCCTTACTTTTCCAGAAGAATG
AATTCGACACAGTGCAAATGGATGTCATTGAAGTCAACTTACTGGATGCT
CTAAAAGGGaagGAGAACCAAATGGTCTTATTCAACCAAATCGCTAACTT
CTTACGAATAaaccctGTTTATGGGTCACTTTCTTCATCCTTCTTGGTGA
AGTTTCAGTTTGAAATTGCTTTACTTTATAAAATTCTCTTTAGGGCACTG
ATGATCAACATTCCAGCTTACGAAAAGTTTAAAGCAGCCACTCTCACGTG
TGGTGAACCGCCAAACGAGACTGCAATTGACCATTTAGATGGGATAGCAA
GGCGCTTTCAGCATCCAGTCTATGCAGAGCCTGAGGTGGCCTTACTTTTC
CAGAAGAATGAATTCGACACAGTGCAAATGGATGTCATTGAAGTCAACTT
ACTGGATGCTCTAAAAGGGaagGAGAACCAAATGGTCTTATTCAACCAAA
TCGCTAACTTCTTACGAATA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_028809XLOC_028809Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00045226-proteinTCONS_00045226-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00045226-exon-sc0007244-1491911889:193..503TCONS_00045226-exon-sc0007244-1491911889:193..503Clytia hemisphaericaexon
TCONS_00045226-exon-sc0007244-1510915933:193..503TCONS_00045226-exon-sc0007244-1510915933:193..503Clytia hemisphaericaexon
TCONS_00045226-exon-sc0007244-1575043694:193..503TCONS_00045226-exon-sc0007244-1575043694:193..503Clytia hemisphaericaexon
TCONS_00045226-exon-sc0007244-1491911889:1006..1057TCONS_00045226-exon-sc0007244-1491911889:1006..1057Clytia hemisphaericaexon
TCONS_00045226-exon-sc0007244-1510915933:1006..1057TCONS_00045226-exon-sc0007244-1510915933:1006..1057Clytia hemisphaericaexon
TCONS_00045226-exon-sc0007244-1575043694:1006..1057TCONS_00045226-exon-sc0007244-1575043694:1006..1057Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0007244supercontigsc0007244:193..1057 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.843 0.999371 0 0 6.13967 1.42372 0 0.710202 6.90044 1.36846 8.94546 0 4.12533 6.6617 6.91802 9.5898 6.14258 5.06747 7.05829 3.96896 5.31899 8.15944 0.769618 2.86383 1.56668 2.45499 2.52577 2.3019 0 1.4644
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00045226 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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