TCONS_00045224 (transcript) - C. hemisphaerica

Overview
NameTCONS_00045224
Unique NameTCONS_00045224
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length660

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00045224 ID=TCONS_00045224|Name=TCONS_00045224|organism=Clytia hemisphaerica|type=transcript|length=660bp
GAAAACTCTCCAGTGGTGTATTTCATGAATTAGCTTAGAACCTTGGCTAG
TAACAGACAATTTTACAGACAAACAAAACAACTATCTAAAATGGACCCGT
TGTCAAGATATGTTTGACTGGGTATACAGGTTTTATGATGTGAAGGAATT
AGCCCTTTGTTCTCAAAGTTTTGGTGTTTGAATAAAAGGGGAGTTTCCAG
AGGTACAACACTTTCTAGTCGGTTCTAACCTCTTTGTAGGTACGGGtgaa
agtagattttttcagatcagttagggtcagggtttgAGCTCGAGAGTCAA
AATAGGGTGGGGAGTAGCATTGGTATAATATATTAATATAATATATAGGT
CTGCAAAATACCTACACACTATAAGTAAATTGTGAATTCAGATTTGAGCC
TTGCCTCCATGGTCTAGTGGTAGCGTACAGAGCTTGCTTATCAAGGGTAC
TTTTTATgtgtgggttcgaatcccaccaggaactcaactttggcaaattt
cagaaTATCAAAATCCCTGTCAGTGTTGACTCCAGAAATTAGCAATCCAA
AATATTACATATATAATGACTTAGTCAGGGAACTCCGTCAATTGCGTTTA
CTGCAATTGGAGTGGTTTTCATTTGTGTTTAGCCTGAAAAGgcttacact
tttttttttt
Run BLAST on NCBI

transcript from alignment at sc0007239:1..660

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00045224 ID=TCONS_00045224|Name=TCONS_00045224|organism=Clytia hemisphaerica|type=transcript|length=660bp|location=Sequence derived from alignment at sc0007239:1..660 (Clytia hemisphaerica)
aaaaaaaaaaagtgtaagcCTTTTCAGGCTAAACACAAATGAAAACCACT
CCAATTGCAGTAAACGCAATTGACGGAGTTCCCTGACTAAGTCATTATAT
ATGTAATATTTTGGATTGCTAATTTCTGGAGTCAACACTGACAGGGATTT
TGATAttctgaaatttgccaaagttgagttcctggtgggattcgaaccca
cacATAAAAAGTACCCTTGATAAGCAAGCTCTGTACGCTACCACTAGACC
ATGGAGGCAAGGCTCAAATCTGAATTCACAATTTACTTATAGTGTGTAGG
TATTTTGCAGACCTATATATTATATTAATATATTATACCAATGCTACTCC
CCACCCTATTTTGACTCTCGAGCTcaaaccctgaccctaactgatctgaa
aaaatctactttcaCCCGTACCTACAAAGAGGTTAGAACCGACTAGAAAG
TGTTGTACCTCTGGAAACTCCCCTTTTATTCAAACACCAAAACTTTGAGA
ACAAAGGGCTAATTCCTTCACATCATAAAACCTGTATACCCAGTCAAACA
TATCTTGACAACGGGTCCATTTTAGATAGTTGTTTTGTTTGTCTGTAAAA
TTGTCTGTTACTAGCCAAGGTTCTAAGCTAATTCATGAAATACACCACTG
GAGAGTTTTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_028807XLOC_028807Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00045224-exon-sc0007239-1491911889:1..660TCONS_00045224-exon-sc0007239-1491911889:1..660Clytia hemisphaericaexon
TCONS_00045224-exon-sc0007239-1510915933:1..660TCONS_00045224-exon-sc0007239-1510915933:1..660Clytia hemisphaericaexon
TCONS_00045224-exon-sc0007239-1575043694:1..660TCONS_00045224-exon-sc0007239-1575043694:1..660Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0007239supercontigsc0007239:1..660 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.235994	0.153421	0.445341	0.348557	0	0	0	0	0.0662892	0.16422	0.71728	0.890633	0.156952	0.108664	0.357347	0.335552	0.295266	0.121055	0.836222	1.48758	0.152115	0.111294	0.0901953	0	0.168917	0	0	1.03605	0.52387	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00045224 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top