TCONS_00045217 (transcript) - C. hemisphaerica

Overview
NameTCONS_00045217
Unique NameTCONS_00045217
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length669

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00045217 ID=TCONS_00045217|Name=TCONS_00045217|organism=Clytia hemisphaerica|type=transcript|length=669bp
gcgtacataaatgctgtatttcatattgtaatgtacaaatacaagaccgc
GTTCAAATAATGACCGCGTCCAAATAATCTcgttcagagttttctatatt
ttctgaGCTCGAAAAATAACTCCCATATTGTACTTTGTACCGCGTTATAA
CTATTACAAATTTAGGGGTATTCAAAAAAGTTGTTCTTTATTACAGCAAT
AATAGGCGAGTCATTCTGTCAGGATCCTGGCAATTTATCCGAGAACAATC
TAATGTACGATCTTTAAGATTCGAACATTTCTCTTGTTCGCTTCCACGAC
ATCTCCCACAAGACCGAATGCAAATATGACCGTATTTTGAACAATGTTGT
GATGGATTGAATGTTTCTCTTAGGAAACAAAATGATGCTTTATCGCCACG
ACCTGATATCAATAATTCTGGAGTTTTTCGTGGTGGTATTGTTGTGTTGG
TTTTCTCTGTTGCTGGTGTCGATTCTGTTGTCTTTATGAAGACTAAATTC
CTAAAATTGTAGGAATTGTagttttggtttttgttttcttgactcCACCT
CCATTGCATAGTTCACAAGTTTATCTACAATTATCTTTGGCTGACTCACT
TTTGTCACAAAAACGTTGATAATACATGCctacaatttgaatttttatcc
aTGCATCGTTTTGAACTTG
Run BLAST on NCBI

protein sequence of TCONS_00045217-protein

>TCONS_00045217-protein ID=TCONS_00045217-protein|Name=TCONS_00045217-protein|organism=Clytia hemisphaerica|type=polypeptide|length=122bp
MQWRWSQENKNQNYNSYNFRNLVFIKTTESTPATEKTNTTIPPRKTPELL
ISGRGDKASFCFLRETFNPSQHCSKYGHICIRSCGRCRGSEQEKCSNLKD
RTLDCSRINCQDPDRMTRLLLL
Run BLAST on NCBI

transcript from alignment at sc0007221:291..959

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00045217 ID=TCONS_00045217|Name=TCONS_00045217|organism=Clytia hemisphaerica|type=transcript|length=669bp|location=Sequence derived from alignment at sc0007221:291..959 (Clytia hemisphaerica)
CAAGTTCAAAACGATGCAtggataaaaattcaaattgtagGCATGTATTA
TCAACGTTTTTGTGACAAAAGTGAGTCAGCCAAAGATAATTGTAGATAAA
CTTGTGAACTATGCAATGGAGGTGgagtcaagaaaacaaaaaccaaaact
ACAATTCCTACAATTTTAGGAATTTAGTCTTCATAAAGACAACAGAATCG
ACACCAGCAACAGAGAAAACCAACACAACAATACCACCACGAAAAACTCC
AGAATTATTGATATCAGGTCGTGGCGATAAAGCATCATTTTGTTTCCTAA
GAGAAACATTCAATCCATCACAACATTGTTCAAAATACGGTCATATTTGC
ATTCGGTCTTGTGGGAGATGTCGTGGAAGCGAACAAGAGAAATGTTCGAA
TCTTAAAGATCGTACATTAGATTGTTCTCGGATAAATTGCCAGGATCCTG
ACAGAATGACTCGCCTATTATTGCTGTAATAAAGAACAACTTTTTTGAAT
ACCCCTAAATTTGTAATAGTTATAACGCGGTACAAAGTACAATATGGGAG
TTATTTTTCGAGCtcagaaaatatagaaaactctgaacgAGATTATTTGG
ACGCGGTCATTATTTGAACgcggtcttgtatttgtacattacaatatgaa
atacagcatttatgtacgc

Coding sequence (CDS) from alignment at sc0007221:291..959

>TCONS_00045217 ID=TCONS_00045217|Name=TCONS_00045217|organism=Clytia hemisphaerica|type=CDS|length=369bp|location=Sequence derived from alignment at sc0007221:291..959 (Clytia hemisphaerica)
ATGCAATGGAGGTGgagtcaagaaaacaaaaaccaaaactACAATTCCTA
CAATTTTAGGAATTTAGTCTTCATAAAGACAACAGAATCGACACCAGCAA
CAGAGAAAACCAACACAACAATACCACCACGAAAAACTCCAGAATTATTG
ATATCAGGTCGTGGCGATAAAGCATCATTTTGTTTCCTAAGAGAAACATT
CAATCCATCACAACATTGTTCAAAATACGGTCATATTTGCATTCGGTCTT
GTGGGAGATGTCGTGGAAGCGAACAAGAGAAATGTTCGAATCTTAAAGAT
CGTACATTAGATTGTTCTCGGATAAATTGCCAGGATCCTGACAGAATGAC
TCGCCTATTATTGCTGTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_028800XLOC_028800Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00045217-proteinTCONS_00045217-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00045217-exon-sc0007221-1491911889:291..959TCONS_00045217-exon-sc0007221-1491911889:291..959Clytia hemisphaericaexon
TCONS_00045217-exon-sc0007221-1510915933:291..959TCONS_00045217-exon-sc0007221-1510915933:291..959Clytia hemisphaericaexon
TCONS_00045217-exon-sc0007221-1575043694:291..959TCONS_00045217-exon-sc0007221-1575043694:291..959Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0007221supercontigsc0007221:291..959 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0.10662	0.189056	0	0	0	0	0	0	0	0	0.102588	0	0	0	0.0578978	0.237374	0	0.48637	0.521985	0.436468	0.202791	0.534334	0.993675	1.83328	2.34283	1.6295	0.120825	0.0872162
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00045217 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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