TCONS_00045211 (transcript) - C. hemisphaerica

Overview
NameTCONS_00045211
Unique NameTCONS_00045211
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length525

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00045211 ID=TCONS_00045211|Name=TCONS_00045211|organism=Clytia hemisphaerica|type=transcript|length=525bp
tttgtAGTGAAAACTATTTCCTGTCACCCATTGTCTGGACAAAAATCAAA
GGATCTGTGATGATGATATCCATGAAAATCATATCAATATCTTTTGATGA
AGAAAGTGGTGATCCAGACAAAGTGATCCCATTTCTGGAGTATTTTGGAT
ATGTTTTCAATCCAGCCAGTGTTATATTTGGCCCGTTCATCACTCACCTA
ACTTACCAGCAAATGTTTATGCACTCAaatattgtaagacattttttaTT
CATCCGAGAAAAttcttcccaatttttttaacatattaCAAATTATCTTT
ATCCTAGGAATCATTTATTCTCACAGTCTATTTTTGAATTGGCTCacatt
ttgatttgattgattattcttgattgtttttttttcgcttCAACGGGCCA
ACTTCTAGAGGCTGTAACTTTTGGTGCAAGTTTTCCAGGGAAAAATAATA
TAGCTGAAGCACTTGTTTTTTCTTGGTAGTTATATCGGTCTTAATTATCT
TCAGCCATATAATATATTAGAATTG
Run BLAST on NCBI

transcript from alignment at sc0007196:252..776

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00045211 ID=TCONS_00045211|Name=TCONS_00045211|organism=Clytia hemisphaerica|type=transcript|length=525bp|location=Sequence derived from alignment at sc0007196:252..776 (Clytia hemisphaerica)
CAATTCTAATATATTATATGGCTGAAGATAATTAAGACCGATATAACTAC
CAAGAAAAAACAAGTGCTTCAGCTATATTATTTTTCCCTGGAAAACTTGC
ACCAAAAGTTACAGCCTCTAGAAGTTGGCCCGTTGaagcgaaaaaaaaac
aatcaagaataatcaatcaaatcaaaatgtGAGCCAATTCAAAAATAGAC
TGTGAGAATAAATGATTCCTAGGATAAAGATAATTTGtaatatgttaaaa
aaattgggaagaaTTTTCTCGGATGAAtaaaaaatgtcttacaatattTG
AGTGCATAAACATTTGCTGGTAAGTTAGGTGAGTGATGAACGGGCCAAAT
ATAACACTGGCTGGATTGAAAACATATCCAAAATACTCCAGAAATGGGAT
CACTTTGTCTGGATCACCACTTTCTTCATCAAAAGATATTGATATGATTT
TCATGGATATCATCATCACAGATCCTTTGATTTTTGTCCAGACAATGGGT
GACAGGAAATAGTTTTCACTacaaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_028794XLOC_028794Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00045211-exon-sc0007196-1491911889:252..776TCONS_00045211-exon-sc0007196-1491911889:252..776Clytia hemisphaericaexon
TCONS_00045211-exon-sc0007196-1510915933:252..776TCONS_00045211-exon-sc0007196-1510915933:252..776Clytia hemisphaericaexon
TCONS_00045211-exon-sc0007196-1575043694:252..776TCONS_00045211-exon-sc0007196-1575043694:252..776Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0007196supercontigsc0007196:252..776 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.90861	1.75172	1.65255	1.36803	9.99268	8.49455	6.49541	6.08093	8.5148	10.3126	12.8533	7.32766	5.45077	5.04033	3.37882	5.13112	4.46693	4.14653	2.0289	2.74753	2.38811	2.06493	2.05965	3.86207	1.56703	2.1516	3.23287	2.13584	3.61376	2.28529
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00045211 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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