TCONS_00045210 (transcript) - C. hemisphaerica

Overview
NameTCONS_00045210
Unique NameTCONS_00045210
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length255

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00045210 ID=TCONS_00045210|Name=TCONS_00045210|organism=Clytia hemisphaerica|type=transcript|length=255bp
ATCTCCATAACTGACTAGGGACCATGATCAATTTATTAGCGAACAATCTT
TCATTTGCAGGGACTCGATGAAGCTGGTATCGACCAAGATGGAGTGTTTA
AAGAATTTCTTGAAGATGTTATCACCGAAGCTTTCAACCCACAACTTAAT
TTGTTTAAGGTATCTATCCTATTCCAACTGTAAGTTTCAGATGTCGTTTT
GTTTTTAGGCGAccctgaaattcaaaaatcgaaataaaagtaaaaatgat
tttgg
Run BLAST on NCBI

transcript from alignment at sc0007195:328..582

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00045210 ID=TCONS_00045210|Name=TCONS_00045210|organism=Clytia hemisphaerica|type=transcript|length=255bp|location=Sequence derived from alignment at sc0007195:328..582 (Clytia hemisphaerica)
ccaaaatcatttttacttttatttcgatttttgaatttcagggTCGCCTA
AAAACAAAACGACATCTGAAACTTACAGTTGGAATAGGATAGATACCTTA
AACAAATTAAGTTGTGGGTTGAAAGCTTCGGTGATAACATCTTCAAGAAA
TTCTTTAAACACTCCATCTTGGTCGATACCAGCTTCATCGAGTCCCTGCA
AATGAAAGATTGTTCGCTAATAAATTGATCATGGTCCCTAGTCAGTTATG
GAGAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_028793XLOC_028793Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00045210-exon-sc0007195-1491911889:328..582TCONS_00045210-exon-sc0007195-1491911889:328..582Clytia hemisphaericaexon
TCONS_00045210-exon-sc0007195-1510915933:328..582TCONS_00045210-exon-sc0007195-1510915933:328..582Clytia hemisphaericaexon
TCONS_00045210-exon-sc0007195-1575043694:328..582TCONS_00045210-exon-sc0007195-1575043694:328..582Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0007195supercontigsc0007195:328..582 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.708835	0.691226	0	0	0	0	0.911319	0	8.3625	5.91903	3.59072	3.30456	3.77139	2.93747	2.8175	2.15972	3.72484	3.81784	2.26052	0.788491	0	1.00286	0	0.738895	0	0	0.971953	0	0	2.40473
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00045210 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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