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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00045197 ID=TCONS_00045197|Name=TCONS_00045197|organism=Clytia hemisphaerica|type=transcript|length=888bp
TGGTTCTCGTCGTAGGGATCATCGTGGCGGTGGTTGTTCGGACAATGGTT
CTCGTCGTAGGGATCATCGTGGCGGTGGTTGTTCGGACAATGGTTCTCGT
CGTAGGGATCATCGTGGCGGTGGTTGTTCGGACAATGGTTCTCGTCGTAG
GGATCATCGTGGCGGTGGTTGTTCGGACAATGGTTCTCGTCGTAGGGATC
ATCGTGGCGGTGGTTGTTCGGACAATGGTTCTCGTCGTAGGGATCATCGT
GGCGGTGGTTGTTCGGAAAGTGGTTGTCGTCGTAGGGATCATCGTGGCGG
TGGTTGTTCGAACAATGATTCTCGTCGTAGGGGCCATCGTGATAAAGGAG
GTAATGTTGTTTATTCATGGTGTAATCTTTGTAATGAAGTGGAGGATGGT
CATCAGGATAGTCGTAAGGAGGATTTGTGTCATCATAATTGTCGTAGTAG
TAATAGTGGTTGTCCGTATCGCCGTTGTATTGGTGTTGATGAATGAAGTC
ATCGTGGTATGGATGTTTCTCATGATTGTTGTAGTGATCGTTGTAGGTGT
GGGTGTCGTATTGGGAATTCCAGTGGTGATCTTCATAATCATCGTCAAAG
TAGTTTTCGTCGTCATATGGGTCGTGGAGTGAGTTTTCATTCTGGTTTCT
TCTTTGGGCGGCAGCATCGGCATTACGTTGTTGTACGTCTGCCAACTCTC
TTCTCAACTGCTGTATTTTTCGAATACATAATACATGTTCGAGATCCATC
GCGCTTACTAAAAGAGAGATAAAATCCCGAGAAATATTCTGTtctatttg
aagaaaatttttgaaagcatgattgttttaaaaaaatgacgtcactcacg
tcacgaagaaaattttgtaaatatgtAAGAAGGAAGTA Run BLAST on NCBI protein sequence of TCONS_00045197-protein >TCONS_00045197-protein ID=TCONS_00045197-protein|Name=TCONS_00045197-protein|organism=Clytia hemisphaerica|type=polypeptide|length=249bp
MDLEHVLCIRKIQQLRRELADVQQRNADAAAQRRNQNENSLHDPYDDENY
FDDDYEDHHWNSQYDTHTYNDHYNNHEKHPYHDDFIHQHQYNGDTDNHYY
YYDNYDDTNPPYDYPDDHPPLHYKDYTMNKQHYLLYHDGPYDENHCSNNH
RHDDPYDDNHFPNNHRHDDPYDENHCPNNHRHDDPYDENHCPNNHRHDDP
YDENHCPNNHRHDDPYDENHCPNNHRHDDPYDENHCPNNHRHDDPYDEN Run BLAST on NCBI transcript from alignment at sc0007177:59..946 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00045197 ID=TCONS_00045197|Name=TCONS_00045197|organism=Clytia hemisphaerica|type=transcript|length=888bp|location=Sequence derived from alignment at sc0007177:59..946 (Clytia hemisphaerica)
TACTTCCTTCTTacatatttacaaaattttcttcgtgacgtgagtgacgt
catttttttaaaacaatcatgctttcaaaaattttcttcaaatagaACAG
AATATTTCTCGGGATTTTATCTCTCTTTTAGTAAGCGCGATGGATCTCGA
ACATGTATTATGTATTCGAAAAATACAGCAGTTGAGAAGAGAGTTGGCAG
ACGTACAACAACGTAATGCCGATGCTGCCGCCCAAAGAAGAAACCAGAAT
GAAAACTCACTCCACGACCCATATGACGACGAAAACTACTTTGACGATGA
TTATGAAGATCACCACTGGAATTCCCAATACGACACCCACACCTACAACG
ATCACTACAACAATCATGAGAAACATCCATACCACGATGACTTCATTCAT
CAACACCAATACAACGGCGATACGGACAACCACTATTACTACTACGACAA
TTATGATGACACAAATCCTCCTTACGACTATCCTGATGACCATCCTCCAC
TTCATTACAAAGATTACACCATGAATAAACAACATTACCTCCTTTATCAC
GATGGCCCCTACGACGAGAATCATTGTTCGAACAACCACCGCCACGATGA
TCCCTACGACGACAACCACTTTCCGAACAACCACCGCCACGATGATCCCT
ACGACGAGAACCATTGTCCGAACAACCACCGCCACGATGATCCCTACGAC
GAGAACCATTGTCCGAACAACCACCGCCACGATGATCCCTACGACGAGAA
CCATTGTCCGAACAACCACCGCCACGATGATCCCTACGACGAGAACCATT
GTCCGAACAACCACCGCCACGATGATCCCTACGACGAGAACCATTGTCCG
AACAACCACCGCCACGATGATCCCTACGACGAGAACCA Coding sequence (CDS) from alignment at sc0007177:59..946 >TCONS_00045197 ID=TCONS_00045197|Name=TCONS_00045197|organism=Clytia hemisphaerica|type=CDS|length=747bp|location=Sequence derived from alignment at sc0007177:59..946 (Clytia hemisphaerica)
ATGGATCTCGAACATGTATTATGTATTCGAAAAATACAGCAGTTGAGAAG
AGAGTTGGCAGACGTACAACAACGTAATGCCGATGCTGCCGCCCAAAGAA
GAAACCAGAATGAAAACTCACTCCACGACCCATATGACGACGAAAACTAC
TTTGACGATGATTATGAAGATCACCACTGGAATTCCCAATACGACACCCA
CACCTACAACGATCACTACAACAATCATGAGAAACATCCATACCACGATG
ACTTCATTCATCAACACCAATACAACGGCGATACGGACAACCACTATTAC
TACTACGACAATTATGATGACACAAATCCTCCTTACGACTATCCTGATGA
CCATCCTCCACTTCATTACAAAGATTACACCATGAATAAACAACATTACC
TCCTTTATCACGATGGCCCCTACGACGAGAATCATTGTTCGAACAACCAC
CGCCACGATGATCCCTACGACGACAACCACTTTCCGAACAACCACCGCCA
CGATGATCCCTACGACGAGAACCATTGTCCGAACAACCACCGCCACGATG
ATCCCTACGACGAGAACCATTGTCCGAACAACCACCGCCACGATGATCCC
TACGACGAGAACCATTGTCCGAACAACCACCGCCACGATGATCCCTACGA
CGAGAACCATTGTCCGAACAACCACCGCCACGATGATCCCTACGACGAGA
ACCATTGTCCGAACAACCACCGCCACGATGATCCCTACGACGAGAAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00045197-exon-sc0007177-1491911889:59..946 | TCONS_00045197-exon-sc0007177-1491911889:59..946 | Clytia hemisphaerica | exon |
| TCONS_00045197-exon-sc0007177-1510915933:59..946 | TCONS_00045197-exon-sc0007177-1510915933:59..946 | Clytia hemisphaerica | exon |
| TCONS_00045197-exon-sc0007177-1575043694:59..946 | TCONS_00045197-exon-sc0007177-1575043694:59..946 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0007177 | supercontig | sc0007177:59..946 . |
Blast
The following BLAST results are available for this feature:
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