TCONS_00045196 (transcript) - C. hemisphaerica

Overview
NameTCONS_00045196
Unique NameTCONS_00045196
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length407

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00045196 ID=TCONS_00045196|Name=TCONS_00045196|organism=Clytia hemisphaerica|type=transcript|length=407bp
GTTACCATGAAGCAGGGTTTGCCCATAAAGTGTTTAGCATATTAAACAAG
ATCTGTGAAGACATTTCACTTTTGTAGATAGCAAGTTTGATCTTCCTCGT
CCTTTCCCTCATTCGTTTTGGAAATCTCAAAGGCTCATCTCGATGGAAAA
ACATTGTCTCAATGATTGAATTTCGTATTCCGGACACCATGTCCGATAAT
TCTCCGTCTGATTCTTGATTGAAATCAACATTTTGTGGTGCTTCTTTATT
GACAATTGTTTTGGTCAGGTAACTGGCTTGATTTTCTTGCTCCAAAGCAT
GCGTGTTTGGTTTGATTATGTACGCATTGTGCAAACATCTTTTCGATGGT
GTGGAAATGACGATCCTTTTTATTAATTGATTCATTCTTATTTATTATTA
CTAATAA
Run BLAST on NCBI

protein sequence of TCONS_00045196-protein

>TCONS_00045196-protein ID=TCONS_00045196-protein|Name=TCONS_00045196-protein|organism=Clytia hemisphaerica|type=polypeptide|length=127bp
MNQLIKRIVISTPSKRCLHNAYIIKPNTHALEQENQASYLTKTIVNKEAP
QNVDFNQESDGELSDMVSGIRNSIIETMFFHRDEPLRFPKRMRERTRKIK
LAIYKSEMSSQILFNMLNTLWANPASW
Run BLAST on NCBI

transcript from alignment at sc0007173:633..1039

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00045196 ID=TCONS_00045196|Name=TCONS_00045196|organism=Clytia hemisphaerica|type=transcript|length=407bp|location=Sequence derived from alignment at sc0007173:633..1039 (Clytia hemisphaerica)
TTATTAGTAATAATAAATAAGAATGAATCAATTAATAAAAAGGATCGTCA
TTTCCACACCATCGAAAAGATGTTTGCACAATGCGTACATAATCAAACCA
AACACGCATGCTTTGGAGCAAGAAAATCAAGCCAGTTACCTGACCAAAAC
AATTGTCAATAAAGAAGCACCACAAAATGTTGATTTCAATCAAGAATCAG
ACGGAGAATTATCGGACATGGTGTCCGGAATACGAAATTCAATCATTGAG
ACAATGTTTTTCCATCGAGATGAGCCTTTGAGATTTCCAAAACGAATGAG
GGAAAGGACGAGGAAGATCAAACTTGCTATCTACAAAAGTGAAATGTCTT
CACAGATCTTGTTTAATATGCTAAACACTTTATGGGCAAACCCTGCTTCA
TGGTAAC

Coding sequence (CDS) from alignment at sc0007173:633..1039

>TCONS_00045196 ID=TCONS_00045196|Name=TCONS_00045196|organism=Clytia hemisphaerica|type=CDS|length=384bp|location=Sequence derived from alignment at sc0007173:633..1039 (Clytia hemisphaerica)
ATGAATCAATTAATAAAAAGGATCGTCATTTCCACACCATCGAAAAGATG
TTTGCACAATGCGTACATAATCAAACCAAACACGCATGCTTTGGAGCAAG
AAAATCAAGCCAGTTACCTGACCAAAACAATTGTCAATAAAGAAGCACCA
CAAAATGTTGATTTCAATCAAGAATCAGACGGAGAATTATCGGACATGGT
GTCCGGAATACGAAATTCAATCATTGAGACAATGTTTTTCCATCGAGATG
AGCCTTTGAGATTTCCAAAACGAATGAGGGAAAGGACGAGGAAGATCAAA
CTTGCTATCTACAAAAGTGAAATGTCTTCACAGATCTTGTTTAATATGCT
AAACACTTTATGGGCAAACCCTGCTTCATGGTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_028779XLOC_028779Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00045196-proteinTCONS_00045196-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00045196-exon-sc0007173-1491911889:633..1039TCONS_00045196-exon-sc0007173-1491911889:633..1039Clytia hemisphaericaexon
TCONS_00045196-exon-sc0007173-1510915933:633..1039TCONS_00045196-exon-sc0007173-1510915933:633..1039Clytia hemisphaericaexon
TCONS_00045196-exon-sc0007173-1575043694:633..1039TCONS_00045196-exon-sc0007173-1575043694:633..1039Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0007173supercontigsc0007173:633..1039 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
70.7763	64.1256	21.9108	14.8863	30.446	22.7222	28.7956	35.5847	37.597	32.1688	33.7653	22.3153	26.4551	25.3701	27.1658	37.8881	71.4249	60.6622	10.6665	12.1583	35.3413	33.9695	78.8908	70.7893	31.3576	29.7029	18.1812	15.9948	54.8899	57.9503
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00045196 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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