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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00045195 ID=TCONS_00045195|Name=TCONS_00045195|organism=Clytia hemisphaerica|type=transcript|length=610bp
CCAGCAGCAGAGGCTAATGAACCACCAGTTGAACAACCAGCTGAAGTAGC
TGAAGTTGCAAAAGAGGAAGTTCCAACTGTTCCGACTTTCTTCAACCCTG
GACAATCGTCATCGAACACAACCACCAATTTCGGTGATCCGTTCAATTCG
CCTTTCATGGCTCAACCAACACCACAGCCATTGGCTACTTCCACCAGCAA
CGCCCAGCCAACACCAGTGGTTGATGACGGTGGTGAGTTGGATGATGACC
TCTTTAGCGGTTTCACGTCGAAGaAGAAAGATATTGGTGGTCCATCCTCC
AAAGGTATATTATTGTTCCAGACTTCATTAACTTTTGGCGTTACTTAGTC
TTTAAACGACTGAAACTGTCTGATTTTCCATCTCCGATCAGGACTtcctt
tatcttttttctgCATTATGATTTATTGATCAATATGTGTGAGCATCACC
TTTAAATAGGACAtgttaaataaattttgacaGATAGCCAATATTGCTAC
AATGAccaccttattacacaaatattactagtcattttattaacacgaat
tgaaaaatttcgtgttaataaaaacccccttaattaaaaccagccgtggt
gtccttgaaa Run BLAST on NCBI protein sequence of TCONS_00045195-protein >TCONS_00045195-protein ID=TCONS_00045195-protein|Name=TCONS_00045195-protein|organism=Clytia hemisphaerica|type=polypeptide|length=115bp
PAAEANEPPVEQPAEVAEVAKEEVPTVPTFFNPGQSSSNTTTNFGDPFNS
PFMAQPTPQPLATSTSNAQPTPVVDDGGELDDDLFSGFTSKKKDIGGPSS
KGILLFQTSLTFGVT Run BLAST on NCBI transcript from alignment at sc0007172:1..1113+ Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00045195 ID=TCONS_00045195|Name=TCONS_00045195|organism=Clytia hemisphaerica|type=transcript|length=1113bp|location=Sequence derived from alignment at sc0007172:1..1113+ (Clytia hemisphaerica)
CCAGCAGCAGAGGCTAATGAACCACCAGTTGAACAACCAGCTGAAGTAGC
TGAAGTTGCAAAAGAGGAAGTTCCAACTGTTCCGACTTTCTTCAACCCTG
GACAATCGTCATCGAACACAACCACCAATTTCGGTTAGTATGATAACTCT
TGCTAATAAAAATTACGTTTCTTTACCTTTTCCGATAAATCCGacatgaa
ataaaaagaagGACGTAGCCCTGGTCATAAATGTCTGCTGTTTGTGATCA
TGATCTACTCGGAGAAAAGTCAAATATTAGGTTTCAagcttatttttatt
ttattacagGTGATCCGTTCAATTCGCCTTTCATGGCTCAACCAACACCA
CAGCCATTGGCTACTTCCACCAGCAACGCCCAGCCAACACCAGTGGTTGA
TGACGGTGGTGAGTTGGATGATGACCTCTTTAGCGGTTTCACGTCGAAGG
TAAAcatcactttttttttcaaaagaaaattcttaaCCCCATGTTGATAA
GATCAAACTTTTAGTGCATTTATAATTCAATAACAACTTTATGGTCGAAT
CCCTGTGTAATAACTTCTGGTAGGGTTTTTCCTGAAAAAGCCGATTTTCA
CAAAACTTTTCTACTAATTGGTCTCTTTGTCTATATAATCCTAATAACCT
CTTTcttttgtgaagtgttcaagTAAAGAATTATAAGTAATTTCGAGAAG
TGCCAAATTGTCTTCTCTTTAGGCTTGTCtttattttgccaatttttAAC
TAAACagcatttctatatttttttagaAGAAAGATATTGGTGGTCCATCC
TCCAAAGGTATATTATTGTTCCAGACTTCATTAACTTTTGGCGTTACTTA
GTCTTTAAACGACTGAAACTGTCTGATTTTCCATCTCCGATCAGGACTtc
ctttatcttttttctgCATTATGATTTATTGATCAATATGTGTGAGCATC
ACCTTTAAATAGGACAtgttaaataaattttgacaGATAGCCAATATTGC
TACAATGAccaccttattacacaaatattactagtcattttattaacacg
aattgaaaaatttcgtgttaataaaaacccccttaattaaaaccagccgt
ggtgtccttgaaa Coding sequence (CDS) from alignment at sc0007172:1..1113+ >TCONS_00045195 ID=TCONS_00045195|Name=TCONS_00045195|organism=Clytia hemisphaerica|type=CDS|length=1044bp|location=Sequence derived from alignment at sc0007172:1..1113+ (Clytia hemisphaerica)
CCAGCAGCAGAGGCTAATGAACCACCAGTTGAACAACCAGCTGAAGTAGC
TGAAGTTGCAAAAGAGGAAGTTCCAACTGTTCCGACTTTCTTCAACCCTG
GACAATCGTCATCGAACACAACCACCAATTTCGGTGATCCGTTCAATTCG
CCTTTCATGGCTCAACCAACACCACAGCCATTGGCTACTTCCACCAGCAA
CGCCCAGCCAACACCAGTGGTTGATGACGGTGGTGAGTTGGATGATGACC
TCTTTAGCGGTTTCACGTCGAAGaAGAAAGATATTGGTGGTCCATCCTCC
AAAGGTATATTATTGTTCCAGACTTCATTAACTTTTGGCGTTACTTAGCC
AGCAGCAGAGGCTAATGAACCACCAGTTGAACAACCAGCTGAAGTAGCTG
AAGTTGCAAAAGAGGAAGTTCCAACTGTTCCGACTTTCTTCAACCCTGGA
CAATCGTCATCGAACACAACCACCAATTTCGGTGATCCGTTCAATTCGCC
TTTCATGGCTCAACCAACACCACAGCCATTGGCTACTTCCACCAGCAACG
CCCAGCCAACACCAGTGGTTGATGACGGTGGTGAGTTGGATGATGACCTC
TTTAGCGGTTTCACGTCGAAGaAGAAAGATATTGGTGGTCCATCCTCCAA
AGGTATATTATTGTTCCAGACTTCATTAACTTTTGGCGTTACTTAGCCAG
CAGCAGAGGCTAATGAACCACCAGTTGAACAACCAGCTGAAGTAGCTGAA
GTTGCAAAAGAGGAAGTTCCAACTGTTCCGACTTTCTTCAACCCTGGACA
ATCGTCATCGAACACAACCACCAATTTCGGTGATCCGTTCAATTCGCCTT
TCATGGCTCAACCAACACCACAGCCATTGGCTACTTCCACCAGCAACGCC
CAGCCAACACCAGTGGTTGATGACGGTGGTGAGTTGGATGATGACCTCTT
TAGCGGTTTCACGTCGAAGaAGAAAGATATTGGTGGTCCATCCTCCAAAG
GTATATTATTGTTCCAGACTTCATTAACTTTTGGCGTTACTTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00045195-exon-sc0007172-1491911889:1..133 | TCONS_00045195-exon-sc0007172-1491911889:1..133 | Clytia hemisphaerica | exon |
| TCONS_00045195-exon-sc0007172-1510915933:1..133 | TCONS_00045195-exon-sc0007172-1510915933:1..133 | Clytia hemisphaerica | exon |
| TCONS_00045195-exon-sc0007172-1575043694:1..133 | TCONS_00045195-exon-sc0007172-1575043694:1..133 | Clytia hemisphaerica | exon |
| TCONS_00045195-exon-sc0007172-1491911889:310..449 | TCONS_00045195-exon-sc0007172-1491911889:310..449 | Clytia hemisphaerica | exon |
| TCONS_00045195-exon-sc0007172-1510915933:310..449 | TCONS_00045195-exon-sc0007172-1510915933:310..449 | Clytia hemisphaerica | exon |
| TCONS_00045195-exon-sc0007172-1575043694:310..449 | TCONS_00045195-exon-sc0007172-1575043694:310..449 | Clytia hemisphaerica | exon |
| TCONS_00045195-exon-sc0007172-1491911889:777..1113 | TCONS_00045195-exon-sc0007172-1491911889:777..1113 | Clytia hemisphaerica | exon |
| TCONS_00045195-exon-sc0007172-1510915933:777..1113 | TCONS_00045195-exon-sc0007172-1510915933:777..1113 | Clytia hemisphaerica | exon |
| TCONS_00045195-exon-sc0007172-1575043694:777..1113 | TCONS_00045195-exon-sc0007172-1575043694:777..1113 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0007172 | supercontig | sc0007172:1..1113 + |
Blast
The following BLAST results are available for this feature:
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