TCONS_00045048 (transcript) - C. hemisphaerica

Overview
NameTCONS_00045048
Unique NameTCONS_00045048
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length562

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00045048 ID=TCONS_00045048|Name=TCONS_00045048|organism=Clytia hemisphaerica|type=transcript|length=562bp
TTAACGTATCTAGCACTACCGCCTATACTGTATCGTCCCTTTCTACCACC
CTTACCGTAGCAACCATCAATGCAACCCCTACCGTAGCAACCGTCAATAC
AACCCCTACCATAGTAACCATCAATACCGCCCCTACCGTAGCAACCATCA
ATGCCACCCCTACCGTGGCAACCGTCAATACAACCCCTACCATAGCAACC
ATCAATGCCGCCCCTACCGTAGCAACCATCAATGCCACCCCTACCGTGGC
AACCGTCAATACAACCCCTACCATAGCAACCATCAATGCCGCCCCTACCA
TAGTAAATGTCAATACCGCCCCTAACGTAGCAAATGTCAATACCGCCCCT
ACCATAGCAGCCGTCAATACCGCCTCTACCGTAGCAACCATCAATGCCGC
CCCTACCGTAGCAACTGTCAATAATGCCCCTACCGTAGCAACCAACAATA
CCGCTCCTACCGTAGCAACCGTCAATGCCGCCCCTACCGTAGCAACCGTC
AATACTGCCTCTACCGTAGCAACCATCAATGCCGCCCCTACCGTAGCAAC
TGTCAATAATGC
Run BLAST on NCBI

protein sequence of TCONS_00045048-protein

>TCONS_00045048-protein ID=TCONS_00045048-protein|Name=TCONS_00045048-protein|organism=Clytia hemisphaerica|type=polypeptide|length=186bp
IIDSCYGRGGIDGCYGRGSIDGCYGRGGIDGCYGRSGIVGCYGRGIIDSC
YGRGGIDGCYGRGGIDGCYGRGGIDICYVRGGIDIYYGRGGIDGCYGRGC
IDGCHGRGGIDGCYGRGGIDGCYGRGCIDGCHGRGGIDGCYGRGGIDGYY
GRGCIDGCYGRGCIDGCYGKGGRKGRYSIGGSARYV
Run BLAST on NCBI

transcript from alignment at sc0006772:720..1281

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00045048 ID=TCONS_00045048|Name=TCONS_00045048|organism=Clytia hemisphaerica|type=transcript|length=562bp|location=Sequence derived from alignment at sc0006772:720..1281 (Clytia hemisphaerica)
GCATTATTGACAGTTGCTACGGTAGGGGCGGCATTGATGGTTGCTACGGT
AGAGGCAGTATTGACGGTTGCTACGGTAGGGGCGGCATTGACGGTTGCTA
CGGTAGGAGCGGTATTGTTGGTTGCTACGGTAGGGGCATTATTGACAGTT
GCTACGGTAGGGGCGGCATTGATGGTTGCTACGGTAGAGGCGGTATTGAC
GGCTGCTATGGTAGGGGCGGTATTGACATTTGCTACGTTAGGGGCGGTAT
TGACATTTACTATGGTAGGGGCGGCATTGATGGTTGCTATGGTAGGGGTT
GTATTGACGGTTGCCACGGTAGGGGTGGCATTGATGGTTGCTACGGTAGG
GGCGGCATTGATGGTTGCTATGGTAGGGGTTGTATTGACGGTTGCCACGG
TAGGGGTGGCATTGATGGTTGCTACGGTAGGGGCGGTATTGATGGTTACT
ATGGTAGGGGTTGTATTGACGGTTGCTACGGTAGGGGTTGCATTGATGGT
TGCTACGGTAAGGGTGGTAGAAAGGGACGATACAGTATAGGCGGTAGTGC
TAGATACGTTAA

Coding sequence (CDS) from alignment at sc0006772:720..1281

>TCONS_00045048 ID=TCONS_00045048|Name=TCONS_00045048|organism=Clytia hemisphaerica|type=CDS|length=558bp|location=Sequence derived from alignment at sc0006772:720..1281 (Clytia hemisphaerica)
ATTATTGACAGTTGCTACGGTAGGGGCGGCATTGATGGTTGCTACGGTAG
AGGCAGTATTGACGGTTGCTACGGTAGGGGCGGCATTGACGGTTGCTACG
GTAGGAGCGGTATTGTTGGTTGCTACGGTAGGGGCATTATTGACAGTTGC
TACGGTAGGGGCGGCATTGATGGTTGCTACGGTAGAGGCGGTATTGACGG
CTGCTATGGTAGGGGCGGTATTGACATTTGCTACGTTAGGGGCGGTATTG
ACATTTACTATGGTAGGGGCGGCATTGATGGTTGCTATGGTAGGGGTTGT
ATTGACGGTTGCCACGGTAGGGGTGGCATTGATGGTTGCTACGGTAGGGG
CGGCATTGATGGTTGCTATGGTAGGGGTTGTATTGACGGTTGCCACGGTA
GGGGTGGCATTGATGGTTGCTACGGTAGGGGCGGTATTGATGGTTACTAT
GGTAGGGGTTGTATTGACGGTTGCTACGGTAGGGGTTGCATTGATGGTTG
CTACGGTAAGGGTGGTAGAAAGGGACGATACAGTATAGGCGGTAGTGCTA
GATACGTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_028632XLOC_028632Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00045048-proteinTCONS_00045048-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00045048-exon-sc0006772-1491911889:720..1281TCONS_00045048-exon-sc0006772-1491911889:720..1281Clytia hemisphaericaexon
TCONS_00045048-exon-sc0006772-1510915933:720..1281TCONS_00045048-exon-sc0006772-1510915933:720..1281Clytia hemisphaericaexon
TCONS_00045048-exon-sc0006772-1575043694:720..1281TCONS_00045048-exon-sc0006772-1575043694:720..1281Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0006772supercontigsc0006772:720..1281 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.201007	0	0.341386	0.111331	0	0	0.516853	0.725807	0.169385	1.25886	0.203647	0.13387	0.735259	0.277663	1.36966	1.65359	0.226343	0.309325	1.92307	1.11798	0.485863	0.142192	0.230471	0.104766	1.83441	1.44456	0	0	1.45016	2.1594
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00045048 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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