TCONS_00045044 (transcript) - C. hemisphaerica

Overview
NameTCONS_00045044
Unique NameTCONS_00045044
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length302

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00045044 ID=TCONS_00045044|Name=TCONS_00045044|organism=Clytia hemisphaerica|type=transcript|length=302bp
TAGCTGTAATAGAAACAATTAATAAACAAACAACAATGCCAATCTACGCA
GTTCGCTGGGCAGACTTTACCCTGTCGCTGATTGAAGCATCTAATCGCAA
CGATCTTTTTTGGAAgattgatgacatttctgatCCAACGTCAGTCACCT
TTCAGGAGTTGGAAAACTCATTGTACATTAATTTGAAATGTAAATCTAAA
GTCATTATTGATGGAGAGGAGGAACAAAAAAAAGATGATGATGGCGTTCC
tttggaaaaattaagaacattgatggAGGACAAGGATTTTTGTGATTTGG
AG
Run BLAST on NCBI

protein sequence of TCONS_00045044-protein

>TCONS_00045044-protein ID=TCONS_00045044-protein|Name=TCONS_00045044-protein|organism=Clytia hemisphaerica|type=polypeptide|length=100bp
AVIETINKQTTMPIYAVRWADFTLSLIEASNRNDLFWKIDDISDPTSVTF
QELENSLYINLKCKSKVIIDGEEEQKKDDDGVPLEKLRTLMEDKDFCDLE
Run BLAST on NCBI

transcript from alignment at sc0006768:614..915

Legend: exonCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00045044 ID=TCONS_00045044|Name=TCONS_00045044|organism=Clytia hemisphaerica|type=transcript|length=302bp|location=Sequence derived from alignment at sc0006768:614..915 (Clytia hemisphaerica)
CTCCAAATCACAAAAATCCTTGTCCTccatcaatgttcttaatttttcca
aaGGAACGCCATCATCATCTTTTTTTTGTTCCTCCTCTCCATCAATAATG
ACTTTAGATTTACATTTCAAATTAATGTACAATGAGTTTTCCAACTCCTG
AAAGGTGACTGACGTTGGatcagaaatgtcatcaatcTTCCAAAAAAGAT
CGTTGCGATTAGATGCTTCAATCAGCGACAGGGTAAAGTCTGCCCAGCGA
ACTGCGTAGATTGGCATTGTTGTTTGTTTATTAATTGTTTCTATTACAGC
TA

Coding sequence (CDS) from alignment at sc0006768:614..915

>TCONS_00045044 ID=TCONS_00045044|Name=TCONS_00045044|organism=Clytia hemisphaerica|type=CDS|length=300bp|location=Sequence derived from alignment at sc0006768:614..915 (Clytia hemisphaerica)
CTCCAAATCACAAAAATCCTTGTCCTccatcaatgttcttaatttttcca
aaGGAACGCCATCATCATCTTTTTTTTGTTCCTCCTCTCCATCAATAATG
ACTTTAGATTTACATTTCAAATTAATGTACAATGAGTTTTCCAACTCCTG
AAAGGTGACTGACGTTGGatcagaaatgtcatcaatcTTCCAAAAAAGAT
CGTTGCGATTAGATGCTTCAATCAGCGACAGGGTAAAGTCTGCCCAGCGA
ACTGCGTAGATTGGCATTGTTGTTTGTTTATTAATTGTTTCTATTACAGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_028629XLOC_028629Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00045044-exon-sc0006768-1491911889:614..915TCONS_00045044-exon-sc0006768-1491911889:614..915Clytia hemisphaericaexon
TCONS_00045044-exon-sc0006768-1510915933:614..915TCONS_00045044-exon-sc0006768-1510915933:614..915Clytia hemisphaericaexon
TCONS_00045044-exon-sc0006768-1575043694:614..915TCONS_00045044-exon-sc0006768-1575043694:614..915Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00045044-proteinTCONS_00045044-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0006768supercontigsc0006768:614..915 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.57739	3.79013	1.94805	1.57897	0.347756	2.67412	3.13018	7.3325	4.65472	4.37276	8.79042	1.92417	2.01725	2.28619	3.40173	3.05007	6.81874	2.05325	1.22419	0	2.69917	3.60382	5.40586	6.44624	5.40871	14.1221	2.78474	1.76744	3.50871	6.03146
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00045044 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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