TCONS_00045035 (transcript) - C. hemisphaerica

Overview
NameTCONS_00045035
Unique NameTCONS_00045035
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length456

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00045035 ID=TCONS_00045035|Name=TCONS_00045035|organism=Clytia hemisphaerica|type=transcript|length=456bp
GAAAAGCGAGCTTCATGTTGGAGGATGGCAAGCTTTGACAACTTCATGTA
AAAAGGCAGGTTTGGGTATAAAGATAAATGGCACACTAAATCGGCACCGA
GTATCGTCAATAATAGGTGCTTTTAACCTAACAGAAACAGACCGAAATTT
AGCATATGATCATTTTGGCCATTCGGAGGCTGTTAACAAGCACATTTACC
AAGTGCCCCAAGCGGAACAGCACTTAGCTCGAACAGGGGCATTCCTCACT
TTAATTGATCAACCAACAACACCCTCGTCTGCCGAATCTGCGTTAAACAT
TCAATCTCCTGATGAACGACAAGTTCCGAACCACAATAAGGTTGCAGGAA
CTATTAACAGTGGTGAGAAGAAATGTGCCAAACGAAAAAGGACAACCaaa
gttgaaaatgaaagtgaagatTCGGATAGTGATGGTGAAGACCCTATTCA
GTGTAA
Run BLAST on NCBI

protein sequence of TCONS_00045035-protein

>TCONS_00045035-protein ID=TCONS_00045035-protein|Name=TCONS_00045035-protein|organism=Clytia hemisphaerica|type=polypeptide|length=151bp
KSELHVGGWQALTTSCKKAGLGIKINGTLNRHRVSSIIGAFNLTETDRNL
AYDHFGHSEAVNKHIYQVPQAEQHLARTGAFLTLIDQPTTPSSAESALNI
QSPDERQVPNHNKVAGTINSGEKKCAKRKRTTKVENESEDSDSDGEDPIQ
C
Run BLAST on NCBI

transcript from alignment at sc0006733:577..1509-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00045035 ID=TCONS_00045035|Name=TCONS_00045035|organism=Clytia hemisphaerica|type=transcript|length=933bp|location=Sequence derived from alignment at sc0006733:577..1509- (Clytia hemisphaerica)
GAAAAGCGAGCTTCATGTTGGAGGATGGCAAGCTTTGACAACTTCATGTA
AAAAGGCAGGTTTGGGTATAAAGATAAATGGCACACTAAATCGGCACCGA
GTATCGTCAATAATAGGTGCTTTTAACCTAACAGAAACAGACCGAAATTT
AGCATATGATCATTTTGGCCATTCGGAGGCTGTTAACAAGCACATTTACC
AAGTGCCCCAAGCGGAACAGCACTTAGCTCGAACAGGGGCATTCCTCACT
TTAATTGATCAACCAACAACACCCTCGTCTGCCGAATCTGCGTTAAACAT
TCAATCTCCTGATGAACGACAAGTTCCGAACCACAATAAGGTTGCAGGAA
CTATTAACAGTGGTATGGCTTTCTATTTAATTAGCAAAAGTTTTACCTAT
ACTAGTAGGCTTCACATTTTACAATCATCTCGCTGTTTCGTTTATGGCCT
AGGTTACTAAAGAAATTTTAATATCTAAATATTAATCACATCTCGCCGTA
TCANCACATTTTACAATCATCTCGCTGTTTCGTTTATGGCCTAGGTTACT
AAAGAAATTTTAATATCTAAATATTAATCACATCTCGCCGTATCACGGCT
CATCAGCTGAACTATTGTAAGGAGGGGTGAACTTAGAACCTTGTGATTCC
GAGTTGTTTTGTTATTACCCACTATACCACCGCGCCATCTAAATATTAAG
ATATTAGTATGCAAATTTAGNCCGGACTGAGCCTAAAACCTTACGGTACG
GCACAAAATAAACTCCTGCTTAACCTCGCTATTGAGAGTTGCTGACGTTA
GCACAAACATTTCCATTTTTAAATTTGTCTTTTTGAAAGGTGAGAAGAAA
TGTGCCAAACGAAAAAGGACAACCAAAGTTGAAAATGAAAGTGAAGATTC
GGATAGTGATGGTGAAGACCCTATTCAGTGTAA

Coding sequence (CDS) from alignment at sc0006733:577..1509-

>TCONS_00045035 ID=TCONS_00045035|Name=TCONS_00045035|organism=Clytia hemisphaerica|type=CDS|length=906bp|location=Sequence derived from alignment at sc0006733:577..1509- (Clytia hemisphaerica)
GTGAGAAGAAATGTGCCAAACGAAAAAGGACAACCAAAGTTGAAAATGAA
AGTGAAGATTCGGATAGTGATGGTGAAGACCCTATTCAGTGTAAAAGCGA
GCTTCATGTTGGAGGATGGCAAGCTTTGACAACTTCATGTAAAAAGGCAG
GTTTGGGTATAAAGATAAATGGCACACTAAATCGGCACCGAGTATCGTCA
ATAATAGGTGCTTTTAACCTAACAGAAACAGACCGAAATTTAGCATATGA
TCATTTTGGCCATTCGGAGGCTGTTAACAAGCACATTTACCAAGTGCCCC
AAGCGGAACAGCACTTAGCTCGAACAGGGGCATTCCTCACTTTAATTGAT
CAACCAACAACACCCTCGTCTGCCGAATCTGCGTTAAACATTCAATCTCC
TGATGAACGACAAGTTCCGAACCACAATAAGGTTGCAGGAACTATTAACA
GTGGTGAGAAGAAATGTGCCAAACGAAAAAGGACAACCAAAGTTGAAAAT
GAAAGTGAAGATTCGGATAGTGATGGTGAAGACCCTATTCAGTGTAAAAG
CGAGCTTCATGTTGGAGGATGGCAAGCTTTGACAACTTCATGTAAAAAGG
CAGGTTTGGGTATAAAGATAAATGGCACACTAAATCGGCACCGAGTATCG
TCAATAATAGGTGCTTTTAACCTAACAGAAACAGACCGAAATTTAGCATA
TGATCATTTTGGCCATTCGGAGGCTGTTAACAAGCACATTTACCAAGTGC
CCCAAGCGGAACAGCACTTAGCTCGAACAGGGGCATTCCTCACTTTAATT
GATCAACCAACAACACCCTCGTCTGCCGAATCTGCGTTAAACATTCAATC
TCCTGATGAACGACAAGTTCCGAACCACAATAAGGTTGCAGGAACTATTA
ACAGTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_028620XLOC_028620Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00045035-proteinTCONS_00045035-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00045035-exon-sc0006733-1575043694:1148..1509TCONS_00045035-exon-sc0006733-1575043694:1148..1509Clytia hemisphaericaexon
TCONS_00045035-exon-sc0006733-1575043694:577..670TCONS_00045035-exon-sc0006733-1575043694:577..670Clytia hemisphaericaexon
TCONS_00045035-exon-sc0006733-1510915933:1148..1509TCONS_00045035-exon-sc0006733-1510915933:1148..1509Clytia hemisphaericaexon
TCONS_00045035-exon-sc0006733-1510915933:577..670TCONS_00045035-exon-sc0006733-1510915933:577..670Clytia hemisphaericaexon
TCONS_00045035-exon-sc0006733-1491911889:1148..1509TCONS_00045035-exon-sc0006733-1491911889:1148..1509Clytia hemisphaericaexon
TCONS_00045035-exon-sc0006733-1491911889:577..670TCONS_00045035-exon-sc0006733-1491911889:577..670Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0006733supercontigsc0006733:577..1509 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.718173	0.140066	0.16263	0	1.1622	1.07145	2.21598	2.24745	3.51011	2.3988	4.22011	8.51373	5.15845	6.64677	0.244681	0.612688	1.50956	0.552591	0.305373	0	0	0.203214	0.329377	0.449177	4.78064	11.0106	0	0	0.159423	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00045035 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top