TCONS_00045031 (transcript) - C. hemisphaerica

Overview
NameTCONS_00045031
Unique NameTCONS_00045031
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length778

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00045031 ID=TCONS_00045031|Name=TCONS_00045031|organism=Clytia hemisphaerica|type=transcript|length=778bp
GCTATTTCGTTTTTATCTGTATCACCATTGTGAACAGctctattatgttt
tttttgtatcTGACACCGAAAGATCTCTTAGACTCACCGATATATGTAGC
ATTacagaaatttgaaatttcctttcTTCCTTTAATCTGCAGAATTTGTA
ATGTagttatgttttttttgtagGTTAGTGTTTTATTAGCGTTTCTTCAG
AGTGAGGAAGTAGTTGGTCGGAGTAGCAGGAGACAAAATTGCATTTGAAT
TTTCCACCATtgaatttgttcttttcttcaGAGAGCTTGCATTAATATAC
ATGGTCCTTATTTACAATAAACTTATTCTTTTTTTGCTAATAAATTGACA
TACGTAAAAATAAGCGATGGCAAAATAAACCAGGGAAAAAATAACGATAT
ACAATATATAGTAATTAGAATTACTTCTTATTCTCTCAGTCGTCACTCTG
TCCttgctttaaaattttaaaatttcagatACGGTTgctaaaaagagaaa
acatttgAAGATTGTGGGAGACCTATGAAAGGACATGCCCTGAGTAACCA
ATTTCGACATTTTTGCTGACAGCCCAGCTGCAGCTTTCTGTCGAAGGCTC
GGTATACCCGGTAGCTTAGTTTCTCTTTAACATCAATAAGATATCCTGAC
ATCTATTTGATGCTTTTCTAAAGAGTTTGgtgtcttttctttgtttactt
CAAAAAACGAGTTTTGATTCTCGAACACCTTTTTAACTCATCAAAGCTGA
TAAGGTATTAAATACCATCGCATTATAG
Run BLAST on NCBI

transcript from alignment at sc0006728:1..778

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00045031 ID=TCONS_00045031|Name=TCONS_00045031|organism=Clytia hemisphaerica|type=transcript|length=778bp|location=Sequence derived from alignment at sc0006728:1..778 (Clytia hemisphaerica)
CTATAATGCGATGGTATTTAATACCTTATCAGCTTTGATGAGTTAAAAAG
GTGTTCGAGAATCAAAACTCGTTTTTTGaagtaaacaaagaaaagacacC
AAACTCTTTAGAAAAGCATCAAATAGATGTCAGGATATCTTATTGATGTT
AAAGAGAAACTAAGCTACCGGGTATACCGAGCCTTCGACAGAAAGCTGCA
GCTGGGCTGTCAGCAAAAATGTCGAAATTGGTTACTCAGGGCATGTCCTT
TCATAGGTCTCCCACAATCTTcaaatgttttctctttttagcAACCGTat
ctgaaattttaaaattttaaagcaaGGACAGAGTGACGACTGAGAGAATA
AGAAGTAATTCTAATTACTATATATTGTATATCGTTATTTTTTCCCTGGT
TTATTTTGCCATCGCTTATTTTTACGTATGTCAATTTATTAGCAAAAAAA
GAATAAGTTTATTGTAAATAAGGACCATGTATATTAATGCAAGCTCTCtg
aagaaaagaacaaattcaATGGTGGAAAATTCAAATGCAATTTTGTCTCC
TGCTACTCCGACCAACTACTTCCTCACTCTGAAGAAACGCTAATAAAACA
CTAACctacaaaaaaaacataactACATTACAAATTCTGCAGATTAAAGG
AAgaaaggaaatttcaaatttctgtAATGCTACATATATCGGTGAGTCTA
AGAGATCTTTCGGTGTCAgatacaaaaaaaacataatagagCTGTTCACA
ATGGTGATACAGATAAAAACGAAATAGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_028616XLOC_028616Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00045031-exon-sc0006728-1491911889:1..778TCONS_00045031-exon-sc0006728-1491911889:1..778Clytia hemisphaericaexon
TCONS_00045031-exon-sc0006728-1510915933:1..778TCONS_00045031-exon-sc0006728-1510915933:1..778Clytia hemisphaericaexon
TCONS_00045031-exon-sc0006728-1575043694:1..778TCONS_00045031-exon-sc0006728-1575043694:1..778Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0006728supercontigsc0006728:1..778 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0.141194	0	3.78377	2.32555	2.64535	2.77673	3.36269	4.16523	2.46363	3.15593	4.51998	3.57436	2.26592	1.17784	5.10193	5.90097	5.63385	4.64697	16.3974	19.4953	4.36092	4.48467	4.21744	4.83939	7.18163	8.21189	9.55026	8.17901
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00045031 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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