TCONS_00045029 (transcript) - C. hemisphaerica

Overview
NameTCONS_00045029
Unique NameTCONS_00045029
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length576

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00045029 ID=TCONS_00045029|Name=TCONS_00045029|organism=Clytia hemisphaerica|type=transcript|length=576bp
TACGGGACTGATCATACCAATATCAACGAAGCCCGTTATCATTTGTTTAC
AAAGTCAAAAACAATTCCTGATCCGAACAGACTTCCACCAACGAGAGACG
CATTGTATCAACACATCAAACGAGCTAACTACCAAACCCGAGAGTGGAAA
TTGGCAATGGACCGGTTTTATCAATGGGAATCCCCTGTTGGGCATGGATG
GATGGATACAGGAGGCGTACTTAATGTCAACTGGATGGAAAACAAGCCCG
CCCCTGACGCAGTTCTCGAGTTTGTATCTTGCAATGTAAATGTAAATCGC
TTGGACTCCCTTGCACCGATTTATGTGAATGTGTGAACTGTGAGAACGAA
CCAAACGCCTCTGAAGAGCAGAAAGACGACGAAGTCGTCGGTGATGACGA
GGGAATGGACGATGACGTAATCGATTTTGACGATTTATTGGATGAAGGCG
ATGAACAAttctttttataactttttatagcttttttattccttttttac
tCAGAAAATGAGCCTTATTAgttaaaattttctactttgttGCTATATCA
TTGTTTATAACAATATTGACATGCTA
Run BLAST on NCBI

protein sequence of TCONS_00045029-protein

>TCONS_00045029-protein ID=TCONS_00045029-protein|Name=TCONS_00045029-protein|organism=Clytia hemisphaerica|type=polypeptide|length=111bp
YGTDHTNINEARYHLFTKSKTIPDPNRLPPTRDALYQHIKRANYQTREWK
LAMDRFYQWESPVGHGWMDTGGVLNVNWMENKPAPDAVLEFVSCNVNVNR
LDSLAPIYVNV
Run BLAST on NCBI

transcript from alignment at sc0006722:3..987+

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00045029 ID=TCONS_00045029|Name=TCONS_00045029|organism=Clytia hemisphaerica|type=transcript|length=985bp|location=Sequence derived from alignment at sc0006722:3..987+ (Clytia hemisphaerica)
TACGGGACTGATCATACCAATATCAACGAAGCCCGTTATCATTTGTTTAC
AAAGTCAAAAACAATTCCTGATCCGAACAGGTATGTTTTTAGTCCACATC
cttgaaatttcacaaaaagtaTCTTCTACCTATAGACCAATTTATTTGTG
ATTGTTTGTTACCGTTGACATAAGATAAATAGCTACAAGAGGCTAATGAA
ATTCAACCTATTTAAAGCTTACAAAAGtcttaaatgaaatgaaatatcCT
TTTGATGTGGCACTAGCATTGGTAAAGATCTGGAAATacaatcgtttgtt
ttatttctacttTAAGACTTCCACCAACGAGAGACGCATTGTATCAACAC
ATCAAACGAGCTAACTACCAAACCCGAGAGTGGAAATTGGCAATGGACCG
GTTTTATCAATGGGAATCCCCTGTTGGGCATGGTACGCTCATATTTATTg
ctaattttgaccaaatttatcaaataagCTAGTAAAGATAGTAAATCGAA
CATAAAGATGTCGGTAGGGTTATGATTAATAGGGCCCTTAATAAGGGTTG
TTTTGGcctatttgaaatttcttcttgTTTAAAGAGATGCATTTTAAATC
TTTAGGATGGATGGATACAGGAGGCGTACTTAATGTCAACTGGATGGAAA
ACAAGCCCGCCCCTGACGCAGTTCTCGAGTTTGTATCTTGCAATGTAAAT
GTAAATCGCTTGGACTCCCTTGCACCGATTTATGTGAATGTGTGAACTGT
GAGAACGAACCAAACGCCTCTGAAGAGCAGAAAGACGACGAAGTCGTCGG
TGATGACGAGGGAATGGACGATGACGTAATCGATTTTGACGATTTATTGG
ATGAAGGCGATGAACAAttctttttataactttttatagcttttttattc
cttttttactCAGAAAATGAGCCTTATTAgttaaaattttctactttgtt
GCTATATCATTGTTTATAACAATATTGACATGCTA

Coding sequence (CDS) from alignment at sc0006722:3..987+

>TCONS_00045029 ID=TCONS_00045029|Name=TCONS_00045029|organism=Clytia hemisphaerica|type=CDS|length=1008bp|location=Sequence derived from alignment at sc0006722:3..987+ (Clytia hemisphaerica)
TACGGGACTGATCATACCAATATCAACGAAGCCCGTTATCATTTGTTTAC
AAAGTCAAAAACAATTCCTGATCCGAACAGACTTCCACCAACGAGAGACG
CATTGTATCAACACATCAAACGAGCTAACTACCAAACCCGAGAGTGGAAA
TTGGCAATGGACCGGTTTTATCAATGGGAATCCCCTGTTGGGCATGGATG
GATGGATACAGGAGGCGTACTTAATGTCAACTGGATGGAAAACAAGCCCG
CCCCTGACGCAGTTCTCGAGTTTGTATCTTGCAATGTAAATGTAAATCGC
TTGGACTCCCTTGCACCGATTTATGTGAATGTGTGATACGGGACTGATCA
TACCAATATCAACGAAGCCCGTTATCATTTGTTTACAAAGTCAAAAACAA
TTCCTGATCCGAACAGACTTCCACCAACGAGAGACGCATTGTATCAACAC
ATCAAACGAGCTAACTACCAAACCCGAGAGTGGAAATTGGCAATGGACCG
GTTTTATCAATGGGAATCCCCTGTTGGGCATGGATGGATGGATACAGGAG
GCGTACTTAATGTCAACTGGATGGAAAACAAGCCCGCCCCTGACGCAGTT
CTCGAGTTTGTATCTTGCAATGTAAATGTAAATCGCTTGGACTCCCTTGC
ACCGATTTATGTGAATGTGTGATACGGGACTGATCATACCAATATCAACG
AAGCCCGTTATCATTTGTTTACAAAGTCAAAAACAATTCCTGATCCGAAC
AGACTTCCACCAACGAGAGACGCATTGTATCAACACATCAAACGAGCTAA
CTACCAAACCCGAGAGTGGAAATTGGCAATGGACCGGTTTTATCAATGGG
AATCCCCTGTTGGGCATGGATGGATGGATACAGGAGGCGTACTTAATGTC
AACTGGATGGAAAACAAGCCCGCCCCTGACGCAGTTCTCGAGTTTGTATC
TTGCAATGTAAATGTAAATCGCTTGGACTCCCTTGCACCGATTTATGTGA
ATGTGTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_028614XLOC_028614Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00045029-proteinTCONS_00045029-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00045029-exon-sc0006722-1491911889:3..82TCONS_00045029-exon-sc0006722-1491911889:3..82Clytia hemisphaericaexon
TCONS_00045029-exon-sc0006722-1510915933:3..82TCONS_00045029-exon-sc0006722-1510915933:3..82Clytia hemisphaericaexon
TCONS_00045029-exon-sc0006722-1575043694:3..82TCONS_00045029-exon-sc0006722-1575043694:3..82Clytia hemisphaericaexon
TCONS_00045029-exon-sc0006722-1491911889:319..434TCONS_00045029-exon-sc0006722-1491911889:319..434Clytia hemisphaericaexon
TCONS_00045029-exon-sc0006722-1510915933:319..434TCONS_00045029-exon-sc0006722-1510915933:319..434Clytia hemisphaericaexon
TCONS_00045029-exon-sc0006722-1575043694:319..434TCONS_00045029-exon-sc0006722-1575043694:319..434Clytia hemisphaericaexon
TCONS_00045029-exon-sc0006722-1491911889:608..987TCONS_00045029-exon-sc0006722-1491911889:608..987Clytia hemisphaericaexon
TCONS_00045029-exon-sc0006722-1510915933:608..987TCONS_00045029-exon-sc0006722-1510915933:608..987Clytia hemisphaericaexon
TCONS_00045029-exon-sc0006722-1575043694:608..987TCONS_00045029-exon-sc0006722-1575043694:608..987Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0006722supercontigsc0006722:3..987 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.290009	0	0	0	1.56437	2.57539	2.48568	1.27989	0.896078	1.41265	0.489696	0.643814	0.257168	0.0667678	0.0548922	0.176723	0.362848	0.223144	0	0.215066	0.373863	0.410303	0	0	35.5689	26.5199	0	0	0.107296	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00045029 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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