TCONS_00045024 (transcript) - C. hemisphaerica

Overview
NameTCONS_00045024
Unique NameTCONS_00045024
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length365

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00045024 ID=TCONS_00045024|Name=TCONS_00045024|organism=Clytia hemisphaerica|type=transcript|length=365bp
ttaacaGGAAGAAGACTGGCCAACCATTCTGATTGGTTTATTTATCCCAG
AACCTACACCTTTCGTCCAATCATATCTTAGACATATTTCCAGCCAAAGA
TATCCCAAATCTAAAATCGATATCTTTCTACATAGTGTGgacccacatCA
CAATGAGGATGTCGAGAAATGGCAAAAAGAATTCAGTTCTCAATACCGTT
CATTCACTCTCAAAGGTCCAAGAAGTTTTTTGACTGATAAAGAAGGACGA
AATATGGGAATCGCTCATTGTCAAAAAGTTGGATGCGATTATTATTTTTC
TGTTGATGCTGACGTCACTCTGTCAAATCATGATTCTTTGAAACTCTTAT
TGCAACAAAACAGGT
Run BLAST on NCBI

transcript from alignment at sc0006703:495..1418-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00045024 ID=TCONS_00045024|Name=TCONS_00045024|organism=Clytia hemisphaerica|type=transcript|length=924bp|location=Sequence derived from alignment at sc0006703:495..1418- (Clytia hemisphaerica)
TTAACAGGAAGAAGACTGGCCAACCATTCTGATTGGTTTATTTATCCCAG
AACCTACACCTTTCGTCCAATCATATCTTAGACATATTTCCAGCCAAAGA
TATCCCAAATCTAAAATCGATATCTTTCTACATAGTGTGGTAAGTTATTT
CATCCCGCTCTGTCTTAGCCCCCCGTGTGTAACATGAGGATTGGAGAAAA
CATTAAAAATATGACGAAGATTTTATACCCTTTCAAATTTGCTCTCTAAT
TTGACGTTCTACTATTCGATAGGCTCACTTATTCGATGAAATTTAAAGTC
CCCGTCAACAAGAAACTCTCATAAACGACGCTCCCTTATTCGATAAGCTC
CCTTATTTGATAAGCTCCCTTATTCGTATCTTGTCTTTGATATACCCTTT
ACGAGAAGAAATTCTGGCGAGAAGAAATTTTGACGAACGAGCCCATTCGC
CAATTTTGGTATAAATGGCGGAATTTATTTTGGCGATTTAATCTTCCCTT
AAGATACAGTAGAGTCTCTATAGTTTGAACCTCTATAACTCGACTGTTTT
TCTTTAAGTCGAACATGTTTAAATGATCCTTTTTAGTTAACAATACATTA
TAAACCTTACTCCATAGTTCAAAATTTCCTTGCGTTTCTGAGTTATTGCG
ACTTCATTTTATTAAATATGTGAACAATTGTCATATCAAATTTTTCAGGA
CCCACATCACAATGAGGATGTCGAGAAATGGCAAAAAGAATTCAGTTCTC
AATACCGTTCATTCACTCTCAAAGGTCCAAGAAGTTTTTTGACTGATAAA
GAAGGACGAAATATGGGAATCGCTCATTGTCAAAAAGTTGGATGCGATTA
TTATTTTTCTGTTGATGCTGACGTCACTCTGTCAAATCATGATTCTTTGA
AACTCTTATTGCAACAAAACAGGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_028609XLOC_028609Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00045024-exon-sc0006703-1575043694:1280..1418TCONS_00045024-exon-sc0006703-1575043694:1280..1418Clytia hemisphaericaexon
TCONS_00045024-exon-sc0006703-1575043694:495..720TCONS_00045024-exon-sc0006703-1575043694:495..720Clytia hemisphaericaexon
TCONS_00045024-exon-sc0006703-1510915933:1280..1418TCONS_00045024-exon-sc0006703-1510915933:1280..1418Clytia hemisphaericaexon
TCONS_00045024-exon-sc0006703-1510915933:495..720TCONS_00045024-exon-sc0006703-1510915933:495..720Clytia hemisphaericaexon
TCONS_00045024-exon-sc0006703-1491911889:1280..1418TCONS_00045024-exon-sc0006703-1491911889:1280..1418Clytia hemisphaericaexon
TCONS_00045024-exon-sc0006703-1491911889:495..720TCONS_00045024-exon-sc0006703-1491911889:495..720Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0006703supercontigsc0006703:495..1418 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.454843	0.665315	0.257498	0	73.299	65.1924	26.8995	30.3838	14.3733	19.4653	20.0455	5.60407	53.089	36.1274	25.3109	29.3798	78.7039	132.64	51.7354	70.5809	47.7148	53.7331	33.6376	40.3012	47.8578	48.1599	4.98944	5.32486	123.433	138.104
Blast
[Close]
BLAST of TCONS_00045024 vs. Swiss-Prot (Human)
Match: PLOD1 (Procollagen-lysine,2-oxoglutarate 5-dioxygenase 1 OS=Homo sapiens GN=PLOD1 PE=1 SV=2)

HSP 1 Score: 107.842 bits (268), Expect = 1.386e-27
Identity = 50/120 (41.67%), Postives = 77/120 (64.17%), Query Frame = 2 
Query:    8 EEDWPTILIGLFIPEPTPFVQSYLRHISSQRYPKSKIDIFLHSVDPHHNEDVEKWQKEFSSQYRSFTLKGPRSFLTDKEGRNMGIAHC-QKVGCDYYFSVDADVTLSNHDSLKLLLQQNR 364
            +E  PT+L+G+FI +PTPFV  + + +    YP+  + +F+H+ + HH   VE++  +  S+Y+S  L GP   + + + RNMG   C Q   C YYFSVDADV L+  +SL+LL+QQN+
Sbjct:  282 DEALPTVLVGVFIEQPTPFVSLFFQRLLRLHYPQKHMRLFIHNHEQHHKAQVEEFLAQHGSEYQSVKLVGPEVRMANADARNMGADLCRQDRSCTYYFSVDADVALTEPNSLRLLIQQNK 401
The following BLAST results are available for this feature:
BLAST of TCONS_00045024 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
PLOD11.386e-2741.67Procollagen-lysine,2-oxoglutarate 5-dioxygenase 1 ... [more]
back to top