TCONS_00045016 (transcript) - C. hemisphaerica

Overview
NameTCONS_00045016
Unique NameTCONS_00045016
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length962

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00045016 ID=TCONS_00045016|Name=TCONS_00045016|organism=Clytia hemisphaerica|type=transcript|length=962bp
Cttgattttataatttatcaatcacgttttcaaaatgttcttatttttcg
ttGCGCTGTCGTTTCCTACCATCAAGAGGAAACGAACTCCCCGGCAGTTA
TTATTCACCGAAGAGATAACCCATCGATCGTGGATCGCGGCCGTCATCAT
TTTGGCTAGTGCTTCCTTGGGATGGGTTGCCACCTCGGAAATCCTATAAT
AAGGAAGACAACATCGAACGTAAGTGGAAAAATTCTATATTAATTTACAA
TCAAATATTAANNNNNNNNNNNNNNNNNNATCATTTTGGCCAGTGCTTCC
TTGGGATGGGTTGCCACCTCGGAAATCCTATAATAAGGAAGACAACATCG
AACGTAAGTGGAAAAATTCTATATTAATTTACaatcaaatattaaatatt
aaaacGTCCTAAAGTTCTCTGATACCAGATCATTGaaccaaataaataaa
atactacaaaaaaaaattttaatcgaCAAATTCTAATCAAATTTTATATA
CAAATCTTCATTTTATGATTCACTAATAACATTCTTGTTACAGTTCCTGA
TGGTTTTTCTTCATTACTTTTCAGGGAATAAACTGAAGAACAACCCCGTA
AGTCCGTCCGAGCGTTGGGCTCAGATTAAAGCTGAGCAAGAAGAGCCTGA
TTGGGATGACGAATTGAATTGTTCGGAATTGTCGGATTCAGCCGAAGTGA
TTGAGTAGCTCGATTCACTCGTCCTGTCGCCAGAAGTAATTGAAAGCTGA
GCGTGGACAATCGCAGCACCATCTTGTCAACCATCAGAATGTTGAACCGT
GAAATATaatgattttttgtttcttttatacACCTCACAAAAATTTCGTT
TGTTATTTCCTTTCCTCCACAGCTTCCTTTGTTTCGTCACAATACATATA
GTACAAACTTTTGCGGTACTTCGGTTACCATGATTGCAACTCTTTTAAAA
TTAATGAGTCTT
Run BLAST on NCBI

transcript from alignment at sc0006680:1..1559-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00045016 ID=TCONS_00045016|Name=TCONS_00045016|organism=Clytia hemisphaerica|type=transcript|length=1559bp|location=Sequence derived from alignment at sc0006680:1..1559- (Clytia hemisphaerica)
CTTGATTTTATAATTTATCAATCACGTTTTCAAAATGTTCTTATTTTTCG
TTGCGCTGTCGTTTCCTACCATCAAGAGGAAACGAACTCCCCGGCAGTTA
TTATTCACCGAAGAGATAACCCATCGATCGTGGATCGCGGCCGTCATCAT
TTTGGCTAGTGCTTCCTTGGGATGGGTTGCCACCTCGGAAATCCTATAAT
AAGGAAGACAACATCGAACGTAAGTGGAAAAATTCTATATTAATTTACAA
TCAAATATTAANNNNNNNNNNNNNNNNNNATCATTTTGGCCAGTGCTTCC
TTGGGATGGGTTGCCACCTCGGAAATCCTATAATAAGGAAGACAACATCG
AACGTAAGTGGAAAAATTCTATATTAATTTACAATCAAATATTAAATATT
AAAACGTCCTAAAGTTCTCTGATACCAGATCATTGAACCAAATAAATAAA
ATACTACAAAAAAAAATTTTAATCGACAAATTCTAATCAAATTTTATATA
CAAATCTTCATTTTATGATTCACTAATAACATTCTTGTTACAGTTCCTGA
TGGTTTTTCTTCATTACTTTTCAGGGAATAAACTGAAGAACAACCCCGTA
AGTCCGTCCGAGCGTTGGGCTCAGATTAAAGCTGAGCAAGAAGAGCCTGA
TTGGGATGACGAATTGAATTGTTCGGAATTGTCGGATTCAGCCGAAGTGA
TTGAGTAGCTCGGTAAGTTTTCATTTGTTTGCAATACTTCCGGCCATTGC
TCATGTACGGGAGCTCCTCGTTGCAGTGGTTGAGGCGGTTTCTCATATCT
CCACACCGTAAACGCTCCGAATTTTTCTTTCCTCAATCCCATTCGACGAA
GATAATCAGCTCTGTATTCTTCTGTTGTCAAACGTATTAAGATATCTAGT
CGGCGGTCTTCTTCCCTGATATTGCTTGCTTCTTTGGGTGATCTTCTTTT
AAGTCTTGTCAAGATTATCTCACTGTGCATCCTTCCAAAATACGAAAGAA
TAAGTTGGGGTTTTGTGTTTATTATATCCCTTTGCAGTTCGATACAGGGT
GCTATCNNNNNTTCTTTTAAGTCTTGTCAAGATTATCTCACTGTGCATCC
TTCCAAAATACGAAAGAATAAGTTGGGGTTTTGTGTTTATTATATCCCTT
TGCAGTTCGATACAGGGTGCTATCTTCAGCTGTATAAATTGAAAGCGAAT
TCTTGTGATTGTGTCTTGATTGATCGCTCACCATGAGGACGACTCGTATT
TTCTTTAACAGCATGGCCTGTTGCTTCTGTGACATAATTTTATCCATCTT
GATTTCTAGATTCACTCGTCCTGTCGCCAGAAGTAATTGAAAGCTGAGCG
TGGACAATCGCAGCACCATCTTGTCAACCATCAGAATGTTGAACCGTGAA
ATATAATGATTTTTTGTTTCTTTTATACACCTCACAAAAATTTCGTTTGT
TATTTCCTTTCCTCCACAGCTTCCTTTGTTTCGTCACAATACATATAGTA
CAAACTTTTGCGGTACTTCGGTTACCATGATTGCAACTCTTTTAAAATTA
ATGAGTCTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_028603XLOC_028603Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00045016-exon-sc0006680-1575043694:848..1559TCONS_00045016-exon-sc0006680-1575043694:848..1559Clytia hemisphaericaexon
TCONS_00045016-exon-sc0006680-1575043694:1..250TCONS_00045016-exon-sc0006680-1575043694:1..250Clytia hemisphaericaexon
TCONS_00045016-exon-sc0006680-1510915933:848..1559TCONS_00045016-exon-sc0006680-1510915933:848..1559Clytia hemisphaericaexon
TCONS_00045016-exon-sc0006680-1510915933:1..250TCONS_00045016-exon-sc0006680-1510915933:1..250Clytia hemisphaericaexon
TCONS_00045016-exon-sc0006680-1491911889:848..1559TCONS_00045016-exon-sc0006680-1491911889:848..1559Clytia hemisphaericaexon
TCONS_00045016-exon-sc0006680-1491911889:1..250TCONS_00045016-exon-sc0006680-1491911889:1..250Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0006680supercontigsc0006680:1..1559 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.726143	1.63876	1.0531	0.834131	0	0	1.0101	0.43756	0.645064	0.385224	0	0.116427	0.538899	0.920748	0.489836	0	0.306635	0	6.83858e-10	1.03928	1.83571	8.1109e-05	0.511655	0	2.8603	3.85841	0.405941	0	0.223811	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00045016 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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