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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00045004 ID=TCONS_00045004|Name=TCONS_00045004|organism=Clytia hemisphaerica|type=transcript|length=1424bp
TGATTTTTCAACAATTGGAGTCGAAACTCTTGGTGAACTTCAAGaacaat
tgaataaaaacaaactgacGAAAGAGCCCGAGACAGCGAAGAAATTGGCA
AATTATTGCTACTTCTACTGCATGATATCACTATTGAAGCGCATTGTCTT
AACCTTGCAGTGTAGCCTTCTTCGACAAAACAGTATGGAGTCCATCCACG
CTGGCGTCGCTAATTACTTGTACAAAACCTTACCGAAAGAAGATCAAAAG
GCGCTCTTAACTGAGCTGCCTGATTAGGAGAACGATCACTGGTGGTGGCT
CTACATCCGTCTTCATACTGATCTAAGTCAACCTCAACGTGAGATAATGT
CAgcctttttcaaacaaattggCTTGGAAATGAAAGGGCAACTATGCACA
ATCTCTAACGATGCTGGTCAGAATATAGCTGCTGCAGAATCCTGGTATGA
CAGCGATAGACGGTATATCATTGCTCGAGctgatgaaaatttctgcaatT
ATCTTTTTAGAATAGTAGGGCCTAAAGATAACTGTTCAATCTATTCAGTT
AAATTTTGCGAATACTTATACCCAGAAGGCACTGTACGAGATAACACGTA
TAGGTGCGTATTTTCATGGCGAAAAGGAGTCACGGTCAACGAAGGTCAAT
GGAATCTTTCCAATAATTCTATATTGAGTATTTACCGAAATGAGTTTATG
TACTGCCATCAAATTCATGATAATATACTTGTTGCCACGAAAGTCGGCGG
TGATGATCCGGATGAGGGAATGTGGAATgtaaataatgtgtattttggAG
ATGACTTTGGTGATGGTTTTAACAGAATGGGAGAATTGAAACAATCATAA
ACTGCCTAAAAAAATTCATAGCTCAGTTGTGCAAGTGACGTTTCTGGTAT
TTCTACTTTTTGTCAAATAAATTTATACTTGATCACTTATCCTTGTTTTT
GGTAGAGAGAATTTGGTTAAGCCGAGATTAACCTTAATGTTTTTCTAAGT
TTATCTTTATTAGTTAGCTCTTGTTAAGACGTCTCACcttttgccctgcc
tattctaattgttagagtaggcacaAGGCGGGCACAAAGTGGGCAGTTAA
AttctttgcttcaaaaaagttgaaagaagacattgcatttaCGTCAAAAG
AAGGCataatgcattgactttagacagccaactatttgcccactttaatt
cacaattagaaaagTAGGGTGAAAAGTGGGcagtctaaactagagctttt
AATTTATCGGTCAATCTTTAATCCATGCATTATATCTCCTGAACTAAGAG
TACAACatatgtaaaaattgaaaagatgCCACGAGTGActcctttctttt
tttctattttgaggGGCGGTAAAACAACCAGGTAGATTTGCTGGATTGCA
GGATTGGGATTGCCATGTCagcct Run BLAST on NCBI protein sequence of TCONS_00045004-protein >TCONS_00045004-protein ID=TCONS_00045004-protein|Name=TCONS_00045004-protein|organism=Clytia hemisphaerica|type=polypeptide|length=167bp
MSAFFKQIGLEMKGQLCTISNDAGQNIAAAESWYDSDRRYIIARADENFC
NYLFRIVGPKDNCSIYSVKFCEYLYPEGTVRDNTYRCVFSWRKGVTVNEG
QWNLSNNSILSIYRNEFMYCHQIHDNILVATKVGGDDPDEGMWNVNNVYF
GDDFGDGFNRMGELKQS Run BLAST on NCBI transcript from alignment at sc0006654:89..1512 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00045004 ID=TCONS_00045004|Name=TCONS_00045004|organism=Clytia hemisphaerica|type=transcript|length=1424bp|location=Sequence derived from alignment at sc0006654:89..1512 (Clytia hemisphaerica)
aggctGACATGGCAATCCCAATCCTGCAATCCAGCAAATCTACCTGGTTG
TTTTACCGCCcctcaaaatagaaaaaaagaaaggagTCACTCGTGGcatc
ttttcaatttttacatatGTTGTACTCTTAGTTCAGGAGATATAATGCAT
GGATTAAAGATTGACCGATAAATTaaaagctctagtttagactgCCCACT
TTTCACCCTActtttctaattgtgaattaaagtgggcaaatagttggctg
tctaaagtcaatgcattatGCCTTCTTTTGACGtaaatgcaatgtcttct
ttcaacttttttgaagcaaagaaTTTAACTGCCCACTTTGTGCCCGCCTt
gtgcctactctaacaattagaataggcagggcaaaagGTGAGACGTCTTA
ACAAGAGCTAACTAATAAAGATAAACTTAGAAAAACATTAAGGTTAATCT
CGGCTTAACCAAATTCTCTCTACCAAAAACAAGGATAAGTGATCAAGTAT
AAATTTATTTGACAAAAAGTAGAAATACCAGAAACGTCACTTGCACAACT
GAGCTATGAATTTTTTTAGGCAGTTTATGATTGTTTCAATTCTCCCATTC
TGTTAAAACCATCACCAAAGTCATCTccaaaatacacattatttacATTC
CACATTCCCTCATCCGGATCATCACCGCCGACTTTCGTGGCAACAAGTAT
ATTATCATGAATTTGATGGCAGTACATAAACTCATTTCGGTAAATACTCA
ATATAGAATTATTGGAAAGATTCCATTGACCTTCGTTGACCGTGACTCCT
TTTCGCCATGAAAATACGCACCTATACGTGTTATCTCGTACAGTGCCTTC
TGGGTATAAGTATTCGCAAAATTTAACTGAATAGATTGAACAGTTATCTT
TAGGCCCTACTATTCTAAAAAGATAattgcagaaattttcatcagCTCGA
GCAATGATATACCGTCTATCGCTGTCATACCAGGATTCTGCAGCAGCTAT
ATTCTGACCAGCATCGTTAGAGATTGTGCATAGTTGCCCTTTCATTTCCA
AGccaatttgtttgaaaaaggcTGACATTATCTCACGTTGAGGTTGACTT
AGATCAGTATGAAGACGGATGTAGAGCCACCACCAGTGATCGTTCTCCTA
ATCAGGCAGCTCAGTTAAGAGCGCCTTTTGATCTTCTTTCGGTAAGGTTT
TGTACAAGTAATTAGCGACGCCAGCGTGGATGGACTCCATACTGTTTTGT
CGAAGAAGGCTACACTGCAAGGTTAAGACAATGCGCTTCAATAGTGATAT
CATGCAGTAGAAGTAGCAATAATTTGCCAATTTCTTCGCTGTCTCGGGCT
CTTTCgtcagtttgtttttattcaattgttCTTGAAGTTCACCAAGAGTT
TCGACTCCAATTGTTGAAAAATCA Coding sequence (CDS) from alignment at sc0006654:89..1512 >TCONS_00045004 ID=TCONS_00045004|Name=TCONS_00045004|organism=Clytia hemisphaerica|type=CDS|length=504bp|location=Sequence derived from alignment at sc0006654:89..1512 (Clytia hemisphaerica)
TTATGATTGTTTCAATTCTCCCATTCTGTTAAAACCATCACCAAAGTCAT
CTccaaaatacacattatttacATTCCACATTCCCTCATCCGGATCATCA
CCGCCGACTTTCGTGGCAACAAGTATATTATCATGAATTTGATGGCAGTA
CATAAACTCATTTCGGTAAATACTCAATATAGAATTATTGGAAAGATTCC
ATTGACCTTCGTTGACCGTGACTCCTTTTCGCCATGAAAATACGCACCTA
TACGTGTTATCTCGTACAGTGCCTTCTGGGTATAAGTATTCGCAAAATTT
AACTGAATAGATTGAACAGTTATCTTTAGGCCCTACTATTCTAAAAAGAT
AattgcagaaattttcatcagCTCGAGCAATGATATACCGTCTATCGCTG
TCATACCAGGATTCTGCAGCAGCTATATTCTGACCAGCATCGTTAGAGAT
TGTGCATAGTTGCCCTTTCATTTCCAAGccaatttgtttgaaaaaggcTG
ACAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00045004-exon-sc0006654-1491911889:89..1512 | TCONS_00045004-exon-sc0006654-1491911889:89..1512 | Clytia hemisphaerica | exon |
| TCONS_00045004-exon-sc0006654-1510915933:89..1512 | TCONS_00045004-exon-sc0006654-1510915933:89..1512 | Clytia hemisphaerica | exon |
| TCONS_00045004-exon-sc0006654-1575043694:89..1512 | TCONS_00045004-exon-sc0006654-1575043694:89..1512 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0006654 | supercontig | sc0006654:89..1512 . |
Blast
The following BLAST results are available for this feature:
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