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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00045003 ID=TCONS_00045003|Name=TCONS_00045003|organism=Clytia hemisphaerica|type=transcript|length=1607bp
CCTTCTTCTCTTTTAACTGGAAACTCGTCTCTCCTGGGTGGAAATTCTTC
TCGGCGTGGTGGAAACTCGTCACGCCTGGGTGGGAATTCTTCCCGTCTGC
CATAATAATCATCTCGAGGAGGTTGTTGACCTTCATAAGCTTCTCTTCGA
GGGGGTTGCGCACCGTAACGGTCGTTTTCAACGTATGGTGCAGCAGCTTC
TGCAGGTCTGCGGTAGGCATCCTCCGGACGGTTCTGAGGAGGACGATCAA
AGTATTGGTCTCCTTCCTTCGGTGGATACGCATCTCGAGGACGATCATCA
TAATGACGGTTCGCATCTGCTGGGTACCGTTCATCCCGGCGTTCGTATAG
GGGTTGATCACGAGGTGGCGGCTGGTCTCGTTGAGGAGGTTGGTCAACAG
GTCTTCGGCCATACGGTGTGGTGTCAACTGCTTGAGGTGGTGGATACTCT
CGGTCATATTGAGAGGGTTGATTCCTTGGTGGGAGGTCACTTCTGCTTGC
AGGAGGCTGTTCAGGTCTGGCAGCTGGTACGTCACTTCGTGGAGGATAAG
CGTCGTTGTAAGGCTCAAGGTGCCGATCATAGGGCGGGCGATGGCTGTCA
ACAGCAGGTGGTCGGCGAACATCAACAGCAGGTGGTCGGCGGCCATCACC
AGGAAGTGGGCGGCGGTCCTCactagggggagggggagggCGATGGGTAT
CTGTAGCATATCGTGGATCCTGATAGATGGGTGTGCTGCGATGTGAATCA
TCGTTCACGCGTGCGTCTTGTGCGCGGTTGGTTTCAGCATGAGGTGGAGC
AGCTCTATCTCGGGGCGGAGGAGCATCACGTGAGCGGGCGTCTGGATACG
AATCTTTAGGGCGGTCGATGCGATCACGGAAACTGTCTGCTCTAGACGAC
GAACGATCGttgaatcgatcacgtgatgggTCACGGCGATCGTCGAGTCG
ACCGGAGCTCGTTTTTCGGTCGTTGCTGTCAAAACGAGGTGGGTCATCAC
GACGGGTGCTACTCGGACGACTGCGATCATTTCTACTATCGTCACGACGT
TGGTAGCTTCTCGAGTCACGATCCCGACCGTCTCTGCTGTCTCGGTCACG
AGTATCCCGACTACTGCTACGATGCTCGTCTTTAGGATAGCGGCCATCTC
CACGACTTCCCTCAATGCGAGTTGACGGTCTTCCTTCACGATAGCTTGAG
GATGACGACTCTTCGCGACGGCTTTCATGTCGGTGGTGTCGGTCATCATC
ACGCCGATCACTCCTCGAGTCGTCCGATCTTCCCATACGATCAGATGATC
CTGGTGTTCGTTGAGGTGGCCCGGTAGAGCCAGGGGTACGGCTAAGTGCC
GGCCCAGCAGAACCAGGGGTTCGACTTGGTGGTGGTCCAGCAGATCCTGG
AGTGCGGTTTGGTGGTGGTCCGGCGGATACTGGAGTACGGTTAGTCGGAG
TCCGAGAGTCTGATGGAGCTGGTCCTCTGGTTGGTGTTCTGTCGGAAGGA
GGCTCGAGCTTTGGGCGTTTCTCTTGTTCGGGATGGCGTGGTGGTGACGA
TCTCTTGGATCCAGCGGGCATCGGCGATTTACCAGGAGTGGTTTGCTCCT
TCTTGAA Run BLAST on NCBI protein sequence of TCONS_00045003-protein >TCONS_00045003-protein ID=TCONS_00045003-protein|Name=TCONS_00045003-protein|organism=Clytia hemisphaerica|type=polypeptide|length=535bp
FKKEQTTPGKSPMPAGSKRSSPPRHPEQEKRPKLEPPSDRTPTRGPAPSD
SRTPTNRTPVSAGPPPNRTPGSAGPPPSRTPGSAGPALSRTPGSTGPPQR
TPGSSDRMGRSDDSRSDRRDDDRHHRHESRREESSSSSYREGRPSTRIEG
SRGDGRYPKDEHRSSSRDTRDRDSRDGRDRDSRSYQRRDDSRNDRSRPSS
TRRDDPPRFDSNDRKTSSGRLDDRRDPSRDRFNDRSSSRADSFRDRIDRP
KDSYPDARSRDAPPPRDRAAPPHAETNRAQDARVNDDSHRSTPIYQDPRY
ATDTHRPPPPPSEDRRPLPGDGRRPPAVDVRRPPAVDSHRPPYDRHLEPY
NDAYPPRSDVPAARPEQPPASRSDLPPRNQPSQYDREYPPPQAVDTTPYG
RRPVDQPPQRDQPPPRDQPLYERRDERYPADANRHYDDRPRDAYPPKEGD
QYFDRPPQNRPEDAYRRPAEAAAPYVENDRYGAQPPRREAYEGQQPPRDD
YYGRREEFPPRRDEFPPRREEFPPRRDEFPVKREE Run BLAST on NCBI transcript from alignment at sc0006650:1..1607 Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00045003 ID=TCONS_00045003|Name=TCONS_00045003|organism=Clytia hemisphaerica|type=transcript|length=1607bp|location=Sequence derived from alignment at sc0006650:1..1607 (Clytia hemisphaerica)
TTCAAGAAGGAGCAAACCACTCCTGGTAAATCGCCGATGCCCGCTGGATC
CAAGAGATCGTCACCACCACGCCATCCCGAACAAGAGAAACGCCCAAAGC
TCGAGCCTCCTTCCGACAGAACACCAACCAGAGGACCAGCTCCATCAGAC
TCTCGGACTCCGACTAACCGTACTCCAGTATCCGCCGGACCACCACCAAA
CCGCACTCCAGGATCTGCTGGACCACCACCAAGTCGAACCCCTGGTTCTG
CTGGGCCGGCACTTAGCCGTACCCCTGGCTCTACCGGGCCACCTCAACGA
ACACCAGGATCATCTGATCGTATGGGAAGATCGGACGACTCGAGGAGTGA
TCGGCGTGATGATGACCGACACCACCGACATGAAAGCCGTCGCGAAGAGT
CGTCATCCTCAAGCTATCGTGAAGGAAGACCGTCAACTCGCATTGAGGGA
AGTCGTGGAGATGGCCGCTATCCTAAAGACGAGCATCGTAGCAGTAGTCG
GGATACTCGTGACCGAGACAGCAGAGACGGTCGGGATCGTGACTCGAGAA
GCTACCAACGTCGTGACGATAGTAGAAATGATCGCAGTCGTCCGAGTAGC
ACCCGTCGTGATGACCCACCTCGTTTTGACAGCAACGACCGAAAAACGAG
CTCCGGTCGACTCGACGATCGCCGTGAcccatcacgtgatcgattcaaCG
ATCGTTCGTCGTCTAGAGCAGACAGTTTCCGTGATCGCATCGACCGCCCT
AAAGATTCGTATCCAGACGCCCGCTCACGTGATGCTCCTCCGCCCCGAGA
TAGAGCTGCTCCACCTCATGCTGAAACCAACCGCGCACAAGACGCACGCG
TGAACGATGATTCACATCGCAGCACACCCATCTATCAGGATCCACGATAT
GCTACAGATACCCATCGccctccccctccccctagtGAGGACCGCCGCCC
ACTTCCTGGTGATGGCCGCCGACCACCTGCTGTTGATGTTCGCCGACCAC
CTGCTGTTGACAGCCATCGCCCGCCCTATGATCGGCACCTTGAGCCTTAC
AACGACGCTTATCCTCCACGAAGTGACGTACCAGCTGCCAGACCTGAACA
GCCTCCTGCAAGCAGAAGTGACCTCCCACCAAGGAATCAACCCTCTCAAT
ATGACCGAGAGTATCCACCACCTCAAGCAGTTGACACCACACCGTATGGC
CGAAGACCTGTTGACCAACCTCCTCAACGAGACCAGCCGCCACCTCGTGA
TCAACCCCTATACGAACGCCGGGATGAACGGTACCCAGCAGATGCGAACC
GTCATTATGATGATCGTCCTCGAGATGCGTATCCACCGAAGGAAGGAGAC
CAATACTTTGATCGTCCTCCTCAGAACCGTCCGGAGGATGCCTACCGCAG
ACCTGCAGAAGCTGCTGCACCATACGTTGAAAACGACCGTTACGGTGCGC
AACCCCCTCGAAGAGAAGCTTATGAAGGTCAACAACCTCCTCGAGATGAT
TATTATGGCAGACGGGAAGAATTCCCACCCAGGCGTGACGAGTTTCCACC
ACGCCGAGAAGAATTTCCACCCAGGAGAGACGAGTTTCCAGTTAAAAGAG
AAGAAGG Coding sequence (CDS) from alignment at sc0006650:1..1607 >TCONS_00045003 ID=TCONS_00045003|Name=TCONS_00045003|organism=Clytia hemisphaerica|type=CDS|length=1605bp|location=Sequence derived from alignment at sc0006650:1..1607 (Clytia hemisphaerica)
TTCAAGAAGGAGCAAACCACTCCTGGTAAATCGCCGATGCCCGCTGGATC
CAAGAGATCGTCACCACCACGCCATCCCGAACAAGAGAAACGCCCAAAGC
TCGAGCCTCCTTCCGACAGAACACCAACCAGAGGACCAGCTCCATCAGAC
TCTCGGACTCCGACTAACCGTACTCCAGTATCCGCCGGACCACCACCAAA
CCGCACTCCAGGATCTGCTGGACCACCACCAAGTCGAACCCCTGGTTCTG
CTGGGCCGGCACTTAGCCGTACCCCTGGCTCTACCGGGCCACCTCAACGA
ACACCAGGATCATCTGATCGTATGGGAAGATCGGACGACTCGAGGAGTGA
TCGGCGTGATGATGACCGACACCACCGACATGAAAGCCGTCGCGAAGAGT
CGTCATCCTCAAGCTATCGTGAAGGAAGACCGTCAACTCGCATTGAGGGA
AGTCGTGGAGATGGCCGCTATCCTAAAGACGAGCATCGTAGCAGTAGTCG
GGATACTCGTGACCGAGACAGCAGAGACGGTCGGGATCGTGACTCGAGAA
GCTACCAACGTCGTGACGATAGTAGAAATGATCGCAGTCGTCCGAGTAGC
ACCCGTCGTGATGACCCACCTCGTTTTGACAGCAACGACCGAAAAACGAG
CTCCGGTCGACTCGACGATCGCCGTGAcccatcacgtgatcgattcaaCG
ATCGTTCGTCGTCTAGAGCAGACAGTTTCCGTGATCGCATCGACCGCCCT
AAAGATTCGTATCCAGACGCCCGCTCACGTGATGCTCCTCCGCCCCGAGA
TAGAGCTGCTCCACCTCATGCTGAAACCAACCGCGCACAAGACGCACGCG
TGAACGATGATTCACATCGCAGCACACCCATCTATCAGGATCCACGATAT
GCTACAGATACCCATCGccctccccctccccctagtGAGGACCGCCGCCC
ACTTCCTGGTGATGGCCGCCGACCACCTGCTGTTGATGTTCGCCGACCAC
CTGCTGTTGACAGCCATCGCCCGCCCTATGATCGGCACCTTGAGCCTTAC
AACGACGCTTATCCTCCACGAAGTGACGTACCAGCTGCCAGACCTGAACA
GCCTCCTGCAAGCAGAAGTGACCTCCCACCAAGGAATCAACCCTCTCAAT
ATGACCGAGAGTATCCACCACCTCAAGCAGTTGACACCACACCGTATGGC
CGAAGACCTGTTGACCAACCTCCTCAACGAGACCAGCCGCCACCTCGTGA
TCAACCCCTATACGAACGCCGGGATGAACGGTACCCAGCAGATGCGAACC
GTCATTATGATGATCGTCCTCGAGATGCGTATCCACCGAAGGAAGGAGAC
CAATACTTTGATCGTCCTCCTCAGAACCGTCCGGAGGATGCCTACCGCAG
ACCTGCAGAAGCTGCTGCACCATACGTTGAAAACGACCGTTACGGTGCGC
AACCCCCTCGAAGAGAAGCTTATGAAGGTCAACAACCTCCTCGAGATGAT
TATTATGGCAGACGGGAAGAATTCCCACCCAGGCGTGACGAGTTTCCACC
ACGCCGAGAAGAATTTCCACCCAGGAGAGACGAGTTTCCAGTTAAAAGAG
AAGAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00045003-exon-sc0006650-1491911889:1..1607 | TCONS_00045003-exon-sc0006650-1491911889:1..1607 | Clytia hemisphaerica | exon |
| TCONS_00045003-exon-sc0006650-1510915933:1..1607 | TCONS_00045003-exon-sc0006650-1510915933:1..1607 | Clytia hemisphaerica | exon |
| TCONS_00045003-exon-sc0006650-1575043694:1..1607 | TCONS_00045003-exon-sc0006650-1575043694:1..1607 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0006650 | supercontig | sc0006650:1..1607 . |
Blast
The following BLAST results are available for this feature:
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