TCONS_00044998 (transcript) - C. hemisphaerica

Overview
NameTCONS_00044998
Unique NameTCONS_00044998
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length922

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00044998 ID=TCONS_00044998|Name=TCONS_00044998|organism=Clytia hemisphaerica|type=transcript|length=922bp
TTTTCAACTGTTTTTAATCTTTCGAAAAACCAGTGTGCAAGATTAACTGC
Agtggaaattattttttcaatatcagcaaaaatagggtcggtcgggcccg
tagaacaacaaattaaatttgtctcGCCTAAAGTGGTCAATTTTCTTTTG
CGGACTGTTACATTGGAAACTTCTGCCTTTTGTGAATTTCGGGTCGGATA
GATTTCACTGTATCATTTTTAAGGTTCAGAATTTCTCAACCTTTCCTTTA
GACTAGAGTcgacttctggctgaactttgcttttcgATATTTATTAATGA
CCTTTCCTTTGAACTAATGTTATCTTTTTCCTATGCTAAGGGCGCCGATA
AATCGGTGAAAGCACCAAGTGGCGAGTCTGCTCTGGAAAGTGCTGAAAAA
GATGAGATCAAGGATTTATTACGATGACTATCTTTGGACGATTGAGAGTA
TCGAATCTGGCTTGGATATGAGATGAGATGAAGGTTTCGtcattgattaa
ttgattgattgatgaaACAATTGGCTAGTTGCAAACATTCtgttacattt
tttttaaaggaaatttatttaattttgcaTACAGGTGGAAAGACATTACG
GGAAAAGGTTTTAAACTTCTTACTTTATTAAAAACCTAAATGTTTTGCCG
TGAACATAAATATGGTGCTTTTCGAGGATTACATAACCCTGGACTTCATT
TCGAGAAAACTTTTCgtcaaaataaaatctattcctttttattccatttt
tagagattagaaatgttttttccaaaactgaaaaataaaattttaatgat
gattTTTATTTAGAAACTTTAGTATTTTTCGTTgacattttgtttgattt
ttgtatAGTAAAAATTTGTATATTCGTCAATCAACTAACTCTACAGTTGG
CAAGAATAAAATCAGTAAAAAA
Run BLAST on NCBI

transcript from alignment at sc0006640:163..1618+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00044998 ID=TCONS_00044998|Name=TCONS_00044998|organism=Clytia hemisphaerica|type=transcript|length=1456bp|location=Sequence derived from alignment at sc0006640:163..1618+ (Clytia hemisphaerica)
TTTTCAACTGTTTTTAATCTTTCGAAAAACCAGTGTGCAAGATTAACTGC
Agtggaaattattttttcaatatcagcaaaaatagggtcggtcgggcccg
tagaacaacaaattaaatttgtctcGCCTAAAGTGGTCAATTTTCTTTTG
CGGACTGTTACATTGGAAACTTCTGCCTTTTGTGAATTTCGGGTCGGATA
GATTTCACTGTATCATTTTTAAGGTTCAGAATTTCTCAACCTTTCCTTTA
GACTAGAGTcgacttctggctgaactttgcttttcgATATTTATTAATGA
CCTTTCCTTTGAACTAATGTTATCTTTTTCCTATGCTAAGGGCGCCGATA
AATCGGTGAAAGCACCAAGTGGCGAGTCTGCTCTGGAAAGTGCTGAAAAA
GATGAGATCAAGGATTTATTACGATGACTATCTTTGGACGATTGAGAGTA
TCGAATCTGGCTTGGATATGAGATGAGGTAAAAGTCACATTTGTTAGTAA
TGTAACCTAGACAGTCTGGGTGCAGATTTATTTGCTTTTATCTCCATACC
TTCTTGCGTACATTATCATTGATAATAATCTTATCAATCAGCCTTAGATT
CtcatatacatgttttttcttttataagcattacGTTTATAAggatatgc
aggctcagttttgggTACCTAAATAATGgcagaatgctaagcataatgcg
agacTGATATagggttgcttataaaaaaatatgtataaNtctattgtttg
agaacaatagaatgctaagcataatgcgagacTGATATagggttgcttat
aaaaaaatatgtataataGGAATCGGGAAATGAAAACTTTGTTCGTAGAA
AGTGATAAGTGAAAGTTCtacatcaaaattcaaaaatcttagaactttgt
caACNAAGTGATAAGTGAAAGTTCtacatcaaaattcaaaaatcttagaa
ctttgtcaACCCCAGATTTAATTGAGTAATCGAGCCTTGTCCTCTCTCTA
CTCTTTTCTAGATGAAGGTTTCGtcattgattaattgattgattgatgaa
ACAATTGGCTAGTTGCAAACATTCtgttacattttttttaaaggaaattt
atttaattttgcaTACAGGTGGAAAGACATTACGGGAAAAGGTTTTAAAC
TTCTTACTTTATTAAAAACCTAAATGTTTTGCCGTGAACATAAATATGGT
GCTTTTCGAGGATTACATAACCCTGGACTTCATTTCGAGAAAACTTTTCg
tcaaaataaaatctattcctttttattccatttttagagattagaaatgt
tttttccaaaactgaaaaataaaattttaatgatgattTTTATTTAGAAA
CTTTAGTATTTTTCGTTgacattttgtttgatttttgtatAGTAAAAATT
TGTATATTCGTCAATCAACTAACTCTACAGTTGGCAAGAATAAAATCAGT
AAAAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_028589XLOC_028589Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044998-exon-sc0006640-1491911889:163..639TCONS_00044998-exon-sc0006640-1491911889:163..639Clytia hemisphaericaexon
TCONS_00044998-exon-sc0006640-1510915933:163..639TCONS_00044998-exon-sc0006640-1510915933:163..639Clytia hemisphaericaexon
TCONS_00044998-exon-sc0006640-1575043694:163..639TCONS_00044998-exon-sc0006640-1575043694:163..639Clytia hemisphaericaexon
TCONS_00044998-exon-sc0006640-1491911889:1174..1618TCONS_00044998-exon-sc0006640-1491911889:1174..1618Clytia hemisphaericaexon
TCONS_00044998-exon-sc0006640-1510915933:1174..1618TCONS_00044998-exon-sc0006640-1510915933:1174..1618Clytia hemisphaericaexon
TCONS_00044998-exon-sc0006640-1575043694:1174..1618TCONS_00044998-exon-sc0006640-1575043694:1174..1618Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0006640supercontigsc0006640:163..1618 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
95.6635	96.6852	91.2461	87.0879	55.0718	39.2681	59.8011	59.5963	46.6947	43.4541	34.9146	30.1828	30.64	26.71	38.7387	42.1605	49.2499	45.0403	29.2747	32.4622	37.2366	36.3156	38.7682	36.8689	29.537	33.2316	46.6045	33.9664	43.9844	36.8886
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00044998 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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