TCONS_00044994 (transcript) - C. hemisphaerica

Overview
NameTCONS_00044994
Unique NameTCONS_00044994
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length525

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00044994 ID=TCONS_00044994|Name=TCONS_00044994|organism=Clytia hemisphaerica|type=transcript|length=525bp
GTTGTGAGCTCCGTCCAtatattgattagtttcttccAATCACTATATGT
CTTACTGGACGATAGCAAAGGAGGAGCTTTGTTGTAAGATGTAGATGCCA
TTGTTCCTCTGCTACCatgtaaaaatgaagaagattaCCTTTCTTCAGGG
TACGGTGGTCTTCACCAATTGTTAGTTCTTGTCACGATCAGTATCATCAG
TTATTGTCAGTAAGTCTTAACACGAATTAACACAACAGGTAAATGTACAG
TTCATTCATTCACATAAATTAAAGCTCCTCCACAGCTGTTATTATTTGTT
ATCAATTATTATTATGTCTGTAACGAAACAATGGATGATTaacacttttt
tggaaaatttggggaaaaagtagaaaattttggaatttcagtcccattca
gagGGTCACCTTTTTCGTAAGTTTCggtaaaattttcgaaaaaaacgaGT
CCCCTGTCAGTCGGCAAGGGTAATACCCCCGGGCTCATTCCTGAAAATAT
AGCATATTAGCAATCCAAAACGCAC
Run BLAST on NCBI

transcript from alignment at sc0006632:1006..1530

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00044994 ID=TCONS_00044994|Name=TCONS_00044994|organism=Clytia hemisphaerica|type=transcript|length=525bp|location=Sequence derived from alignment at sc0006632:1006..1530 (Clytia hemisphaerica)
GTGCGTTTTGGATTGCTAATATGCTATATTTTCAGGAATGAGCCCGGGGG
TATTACCCTTGCCGACTGACAGGGGACtcgtttttttcgaaaattttacc
GAAACTTACGAAAAAGGTGACCctctgaatgggactgaaattccaaaatt
ttctactttttccccaaattttccaaaaaagtgttAATCATCCATTGTTT
CGTTACAGACATAATAATAATTGATAACAAATAATAACAGCTGTGGAGGA
GCTTTAATTTATGTGAATGAATGAACTGTACATTTACCTGTTGTGTTAAT
TCGTGTTAAGACTTACTGACAATAACTGATGATACTGATCGTGACAAGAA
CTAACAATTGGTGAAGACCACCGTACCCTGAAGAAAGGtaatcttcttca
tttttacatGGTAGCAGAGGAACAATGGCATCTACATCTTACAACAAAGC
TCCTCCTTTGCTATCGTCCAGTAAGACATATAGTGATTggaagaaactaa
tcaatataTGGACGGAGCTCACAAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_028585XLOC_028585Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044994-exon-sc0006632-1491911889:1006..1530TCONS_00044994-exon-sc0006632-1491911889:1006..1530Clytia hemisphaericaexon
TCONS_00044994-exon-sc0006632-1510915933:1006..1530TCONS_00044994-exon-sc0006632-1510915933:1006..1530Clytia hemisphaericaexon
TCONS_00044994-exon-sc0006632-1575043694:1006..1530TCONS_00044994-exon-sc0006632-1575043694:1006..1530Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0006632supercontigsc0006632:1006..1530 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.445544	0.404026	0	0.523836	0.600064	0.61049	0.245088	0.788721	0.891379	1.18433	0	0.71379	0.292682	0	1.20748	0.837558	0.307795	0.711986	0.61115	1.56589	0.970743	0.548196	0.352604	0.268547	0	0.297078	2.90981	2.60733	0	1.27385
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00044994 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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