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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00044990 ID=TCONS_00044990|Name=TCONS_00044990|organism=Clytia hemisphaerica|type=transcript|length=1209bpRun BLAST on NCBI protein sequence of TCONS_00044990-protein >TCONS_00044990-protein ID=TCONS_00044990-protein|Name=TCONS_00044990-protein|organism=Clytia hemisphaerica|type=polypeptide|length=361bp MNEIEEMKIKTEQEEDHGCYETNHEHLEIIIKLEDESIGYPDDEIFEPLKRun BLAST on NCBI transcript from alignment at sc0006623:432..1640 Legend: exonfive_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00044990 ID=TCONS_00044990|Name=TCONS_00044990|organism=Clytia hemisphaerica|type=transcript|length=1209bp|location=Sequence derived from alignment at sc0006623:432..1640 (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0006623:432..1640 >TCONS_00044990 ID=TCONS_00044990|Name=TCONS_00044990|organism=Clytia hemisphaerica|type=CDS|length=1083bp|location=Sequence derived from alignment at sc0006623:432..1640 (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00044990 vs. Swiss-Prot (Human)
Match: ZN510 (Zinc finger protein 510 OS=Homo sapiens GN=ZNF510 PE=2 SV=1) HSP 1 Score: 171.014 bits (432), Expect = 8.903e-47 Identity = 103/231 (44.59%), Postives = 128/231 (55.41%), Query Frame = -1
Query: 1 HEIIKAFECQECGESFATKRNLVMHQVTVHEGINPFECQECGKSFGKKSNLTLHQLT---------------------------VHQGIKAFTCEESGKSFGQKANLTSHQRTVHGGVKPFQCQECGKTFGQKANLTSHQKTVHQGIKAFKCQECSKCFAEKSFRRKTTLTSHQKTVHESVKAFKCQECGNCFFTEINLKRHQKTVHQGVKAFKCQECSKCFAEKKNLTSH 612
H ++K ++C ECG+SF K +L+ HQ T H G PFEC ECGK+F +KS+L+ HQ +H G K + C E GK+F QK+ L H R +H G K FQC +CGKTFGQK+NL HQ+T H G K ++C EC EKSF RK L HQKT H K FKC ECG F L+ HQ+ +H G K FKC EC K F K L+ H
Sbjct: 398 HSMMKPYKCNECGKSFCQKGHLIQHQRT-HTGEKPFECSECGKTFSQKSHLSTHQRIHTAEKPYKCNECGKTFVQKSTLRGHQRIHTGEKPYECSECGKTFVQKSTLRDHHR-IHTGEKSFQCNQCGKTFGQKSNLRIHQRT-HTGEKTYQCNEC-----EKSFWRKDHLIQHQKT-HTGEKPFKCNECGKTFARTSTLRVHQR-IHTGEKPFKCNECGKKFVRKAILSDH 618 HSP 2 Score: 167.933 bits (424), Expect = 1.178e-45 Identity = 97/207 (46.86%), Postives = 125/207 (60.39%), Query Frame = -1
Query: 1 ESLHEIIKAFECQECGESFATKRNLVMHQVTVHEGINPFECQECGKSFGKKSNLTLHQLTVHQGIKAFTCEESGKSFGQKANLTSHQRTVHGGVKPFQCQECGKTFGQKANLTSHQKTVHQGIKAFKCQECSKCFAEKSFRRKTTLTSHQKTVHESVKAFKCQECGNCFFTEINLKRHQKTVHQGVKAFKCQECSKCFAEKKNLTSH 621
+ +H K ++C ECG++F K L HQ +H G P+EC ECGK+F +KS L H +H G K+F C + GK+FGQK+NL HQRT H G K +QC EC K+F +K +L HQKT H G K FKC EC K FA R +TL HQ+ +H K FKC ECG F + L HQ+ +H G K F+C +C K F +K NL H
Sbjct: 451 QRIHTAEKPYKCNECGKTFVQKSTLRGHQ-RIHTGEKPYECSECGKTFVQKSTLRDHH-RIHTGEKSFQCNQCGKTFGQKSNLRIHQRT-HTGEKTYQCNECEKSFWRKDHLIQHQKT-HTGEKPFKCNECGKTFA-----RTSTLRVHQR-IHTGEKPFKCNECGKKFVRKAILSDHQR-IHTGEKPFQCNKCGKTFGQKSNLRIH 646 HSP 3 Score: 128.257 bits (321), Expect = 6.933e-32 Identity = 74/164 (45.12%), Postives = 101/164 (61.59%), Query Frame = -1
Query: 124 LHEIIKAFECQECGESFATKRNLVMHQVTVHEGINPFECQECGKSFGKKSNLTLHQLTVHQGIKAFTCEESGKSFGQKANLTSHQRTVHGGVKPFQCQECGKTFGQKANLTSHQKTVHQGIKAFKCQECSKCFAEKSFRRKTTLTSHQKTVHESVKAFKCQECG 615
+H K+F+C +CG++F K NL +HQ T H G ++C EC KSF +K +L HQ T H G K F C E GK+F + + L HQR +H G KPF+C ECGK F +KA L+ HQ+ +H G K F+C +C K F +KS L HQ+T H K+++C E G
Sbjct: 509 IHTGEKSFQCNQCGKTFGQKSNLRIHQRT-HTGEKTYQCNECEKSFWRKDHLIQHQKT-HTGEKPFKCNECGKTFARTSTLRVHQR-IHTGEKPFKCNECGKKFVRKAILSDHQR-IHTGEKPFQCNKCGKTFGQKS-----NLRIHQRT-HSGEKSYECNEYG 662 HSP 4 Score: 126.331 bits (316), Expect = 2.761e-31 Identity = 71/144 (49.31%), Postives = 94/144 (65.28%), Query Frame = -1
Query: 169 KAFECQECGESFATKRNLVMHQVTVHEGINPFECQECGKSFGKKSNLTLHQLTVHQGIKAFTCEESGKSFGQKANLTSHQRTVHGGVKPFQCQECGKTFGQKANLTSHQKTVHQGIKAFKCQECSKCFAEKSFRRKTTLTSHQK 600
K ++C EC +SF K +L+ HQ T H G PF+C ECGK+F + S L +HQ +H G K F C E GK F +KA L+ HQR +H G KPFQC +CGKTFGQK+NL HQ+T H G K+++C E K +K+TL+ +QK
Sbjct: 542 KTYQCNECEKSFWRKDHLIQHQKT-HTGEKPFKCNECGKTFARTSTLRVHQ-RIHTGEKPFKCNECGKKFVRKAILSDHQR-IHTGEKPFQCNKCGKTFGQKSNLRIHQRT-HSGEKSYECNEYGK------LCKKSTLSLYQK 675 HSP 5 Score: 108.997 bits (271), Expect = 1.652e-25 Identity = 72/212 (33.96%), Postives = 114/212 (53.77%), Query Frame = -1
Query: 1 KAFECQECGESFATKRNLVMHQVTVHEGINPFECQECGKSFGKKSNLTLHQLTV------------HQGIKAFTCEESGKSFGQKANLTSHQRTVHGGVKPFQCQECGKTFGQKANLTSHQKTVHQGIKAFKCQECSKCFAEKSFRRKTTLTSHQKTVHESVKAFKCQECGNCFFTEINLKRHQKTVHQGVKAFKCQECSKCFAEKKNLTSH 600
K +CG+SF +++ V ++ GI +E G +F +K++LT Q V +K+ E+ KS+ + ++ +R H +KP++C ECGK+F QK +L HQ+T H G K F+C EC K F++KS L++HQ+ +H + K +KC ECG F + L+ HQ+ +H G K ++C EC K F +K L H
Sbjct: 307 KHLHLNQCGKSF--EKSTVEEYNKLNMGIKHYELNPSGNNFNRKAHLTDPQTAVIEENPLVSNDRTQTWVKSSEYHENKKSY--QTSVHRVRRRSHSMMKPYKCNECGKSFCQKGHLIQHQRT-HTGEKPFECSECGKTFSQKSH-----LSTHQR-IHTAEKPYKCNECGKTFVQKSTLRGHQR-IHTGEKPYECSECGKTFVQKSTLRDH 506 The following BLAST results are available for this feature:
BLAST of TCONS_00044990 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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