TCONS_00044987 (transcript) - C. hemisphaerica

Overview
NameTCONS_00044987
Unique NameTCONS_00044987
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length274

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00044987 ID=TCONS_00044987|Name=TCONS_00044987|organism=Clytia hemisphaerica|type=transcript|length=274bp
TGGCAGCCCGGAGTTggacttttggagttttttgccgtaaatgttgcatt
tttgccGCCATTTTAAAAAAAGACGCAAAAATTTCAGGGgtcaattatat
attttttggtaCATTTCTGGGAGTACTTTCAGGAACTGAACTcagaaaaa
aagggttttttgatattttttagaattttcatctcaaaaattttttaaac
tttgtcgCTTTTTTAGTCTTTTTCAGCACCGTAGGCCACTACTGGGTCAT
ATTATACTCTGAAAAATCCTTGGT
Run BLAST on NCBI

transcript from alignment at sc0006612:1378..1651

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00044987 ID=TCONS_00044987|Name=TCONS_00044987|organism=Clytia hemisphaerica|type=transcript|length=274bp|location=Sequence derived from alignment at sc0006612:1378..1651 (Clytia hemisphaerica)
ACCAAGGATTTTTCAGAGTATAATATGACCCAGTAGTGGCCTACGGTGCT
GAAAAAGACTAAAAAAGcgacaaagtttaaaaaatttttgagatgaaaat
tctaaaaaatatcaaaaaaccctttttttctgAGTTCAGTTCCTGAAAGT
ACTCCCAGAAATGtaccaaaaaatatataattgacCCCTGAAATTTTTGC
GTCTTTTTTTAAAATGGCggcaaaaatgcaacatttacggcaaaaaactc
caaaagtccAACTCCGGGCTGCCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_028578XLOC_028578Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044987-exon-sc0006612-1491911889:1378..1651TCONS_00044987-exon-sc0006612-1491911889:1378..1651Clytia hemisphaericaexon
TCONS_00044987-exon-sc0006612-1510915933:1378..1651TCONS_00044987-exon-sc0006612-1510915933:1378..1651Clytia hemisphaericaexon
TCONS_00044987-exon-sc0006612-1575043694:1378..1651TCONS_00044987-exon-sc0006612-1575043694:1378..1651Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0006612supercontigsc0006612:1378..1651 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.07175	0.522562	6.67419	2.37442	0.722657	1.14211	0	2.57995	0	0.559344	1.08583	0.356889	0.356393	0.740236	0.304287	1.30619	1.60912	1.64929	0.569647	1.78828	1.55434	0.758153	0	0	0	0.513481	0	1.56838	1.18956	4.2419
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00044987 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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