TCONS_00044983 (transcript) - C. hemisphaerica

Overview
NameTCONS_00044983
Unique NameTCONS_00044983
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length397

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00044983 ID=TCONS_00044983|Name=TCONS_00044983|organism=Clytia hemisphaerica|type=transcript|length=397bp
GATCAGCAACAATATGGATATGATAAAATATTAATATGGATCAAATAACA
GCAATCGTATGTAAATATTTATAAGTGGCAAAACGTGTCTGACTCGTGTC
TGCAGTGTGAATTTTAGACTGATTCATCAGGATGTCCTAAAGCACAAAGT
CTTTGAAGAAACAAGTTCATTCCCAAACTTCTTCTTCATGTTTCCAAGGA
AGGAGTCGAAGCGCCTGGTGTTGAAGTTGTAAATGTAAAGAGCGCGAAAg
cttacaaaatagaaaagagaGTGCAAGGAGCAAACACAGCACGGATAGAA
GTGAGAGGACAGAAAAACAGAACACGGCACGGACTGCGGACAGACAGGAC
AGgacagacagacacacggaAAGTTCCTCTTGAAAGGCCCCTTCGCA
Run BLAST on NCBI

transcript from alignment at sc0006597:1273..1669

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00044983 ID=TCONS_00044983|Name=TCONS_00044983|organism=Clytia hemisphaerica|type=transcript|length=397bp|location=Sequence derived from alignment at sc0006597:1273..1669 (Clytia hemisphaerica)
TGCGAAGGGGCCTTTCAAGAGGAACTTtccgtgtgtctgtctgtcCTGTC
CTGTCTGTCCGCAGTCCGTGCCGTGTTCTGTTTTTCTGTCCTCTCACTTC
TATCCGTGCTGTGTTTGCTCCTTGCACtctcttttctattttgtaagcTT
TCGCGCTCTTTACATTTACAACTTCAACACCAGGCGCTTCGACTCCTTCC
TTGGAAACATGAAGAAGAAGTTTGGGAATGAACTTGTTTCTTCAAAGACT
TTGTGCTTTAGGACATCCTGATGAATCAGTCTAAAATTCACACTGCAGAC
ACGAGTCAGACACGTTTTGCCACTTATAAATATTTACATACGATTGCTGT
TATTTGATCCATATTAATATTTTATCATATCCATATTGTTGCTGATC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_028574XLOC_028574Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044983-exon-sc0006597-1491911889:1273..1669TCONS_00044983-exon-sc0006597-1491911889:1273..1669Clytia hemisphaericaexon
TCONS_00044983-exon-sc0006597-1510915933:1273..1669TCONS_00044983-exon-sc0006597-1510915933:1273..1669Clytia hemisphaericaexon
TCONS_00044983-exon-sc0006597-1575043694:1273..1669TCONS_00044983-exon-sc0006597-1575043694:1273..1669Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0006597supercontigsc0006597:1273..1669 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.380479	0.898804	0	0	0.276742	0.653145	0	0.527627	0.277441	0.596625	0	0	0	0.3716	0.5081	0	0	0.236836	0	1.52161	0	1.04602	0	0	0	0.84112	0.568888	1.11618	0.659461	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00044983 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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