TCONS_00044979 (transcript) - C. hemisphaerica

Overview
NameTCONS_00044979
Unique NameTCONS_00044979
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length272

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00044979 ID=TCONS_00044979|Name=TCONS_00044979|organism=Clytia hemisphaerica|type=transcript|length=272bp
CACAATAATTAATAATCGCAACGTCTggatttttgtccataatttgttga
aaaatactttggtctTACTTAATCAAATCCCAGTAACACTTTATGATAAT
TAAATGATCTAAAAGTTCATCAAATCATCCATCGCATCATCGTCTTAAAT
ATCAAATCGCAGCAGTGGTGAAAAAACTCCAATACATCAATTGCAAATCG
ATAATCGCACCGTCTggatttttgtccataatttgttgaaagatactTTC
ATCTTACTTAATGAAATTCCAG
Run BLAST on NCBI

transcript from alignment at sc0006594:4..275

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00044979 ID=TCONS_00044979|Name=TCONS_00044979|organism=Clytia hemisphaerica|type=transcript|length=272bp|location=Sequence derived from alignment at sc0006594:4..275 (Clytia hemisphaerica)
CTGGAATTTCATTAAGTAAGATGAAagtatctttcaacaaattatggaca
aaaatccAGACGGTGCGATTATCGATTTGCAATTGATGTATTGGAGTTTT
TTCACCACTGCTGCGATTTGATATTTAAGACGATGATGCGATGGATGATT
TGATGAACTTTTAGATCATTTAATTATCATAAAGTGTTACTGGGATTTGA
TTAAGTAagaccaaagtatttttcaacaaattatggacaaaaatccAGAC
GTTGCGATTATTAATTATTGTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_028570XLOC_028570Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044979-exon-sc0006594-1491911889:4..275TCONS_00044979-exon-sc0006594-1491911889:4..275Clytia hemisphaericaexon
TCONS_00044979-exon-sc0006594-1510915933:4..275TCONS_00044979-exon-sc0006594-1510915933:4..275Clytia hemisphaericaexon
TCONS_00044979-exon-sc0006594-1575043694:4..275TCONS_00044979-exon-sc0006594-1575043694:4..275Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0006594supercontigsc0006594:4..275 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.872443	4.12647	0	0	5.13556	5.06378e-05	0.115436	0	0.226784	6.37844	0	5.40545	2.14385	3.21189	1.58882	0.595367	0.458082	8.61374	10.8415	4.87069	9.19351	12.2606	7.84049	9.45486	0	0.217736	15.8641	11.2848	0	9.74218
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00044979 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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