TCONS_00044971 (transcript) - C. hemisphaerica

Overview
NameTCONS_00044971
Unique NameTCONS_00044971
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length820

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00044971 ID=TCONS_00044971|Name=TCONS_00044971|organism=Clytia hemisphaerica|type=transcript|length=820bp
cgaatctgaaggtctttctttggtggtggttcgaatcccactcggtgcga
aaattagactggtcgaaattgatggacaaatgattgacaggtatgaaaac
tcagtcagaaatgagaaaataTGANAACTAAATggtgttttttgacattt
tcgtcaaaatagaGTTTAATATATCGCTGGAAAGCTTATGCTCTCTGCTT
TAAGGCAACGCAATTTTCGTAACACCTCCTGTTCCTGATGCCGTAGAGAG
TTTAAATTTCCGCCATTTTACGCCCAATACGCCCGTGTATCTCTGACGAC
CATTTTGAGCTATTAGTTATACTGCAAATCCACACAACAGCGTTCTGAAA
TTGGAGCTCCTGGAGAAAAGTCACAACATTTTAGTGTCTTCTCCAGTTTT
GTATTGCAGTTGTTTTTGTGGTGAAAGAAGGTTATAAATATAATGAAATG
GGATCTACAAAGAGATATACATACACAAGGAGCAGTAAAAGGAAAGGATT
TGCTGGAACGCGGTATGTCAAGACAGCGAAAAGTAGTACACCGACAACTG
ATGAAATCAACGCTGACGCGCAACGTTCTGGTGCTTCTGCTAAGAAATTG
AACATTTCTACTCAATCTGCTATTGATAATCCAACTGAAACTTGTTTAGA
AAACTGTAATTTCATTGTTGAGAGTGATTTGTTTATGTCACTTATATTGT
CGATTGGCTCATGTATTGATTgccagtcaggcacatccttgCAATTGCAC
GGGGTTATTCGCGAATGCGATCGGTTGCAAATGCAACGggtagaaaacga
aagtgacgtaataccCTTCG
Run BLAST on NCBI

protein sequence of TCONS_00044971-protein

>TCONS_00044971-protein ID=TCONS_00044971-protein|Name=TCONS_00044971-protein|organism=Clytia hemisphaerica|type=polypeptide|length=124bp
MGSTKRYTYTRSSKRKGFAGTRYVKTAKSSTPTTDEINADAQRSGASAKK
LNISTQSAIDNPTETCLENCNFIVESDLFMSLILSIGSCIDCQSGTSLQL
HGVIRECDRLQMQRVENESDVIPF
Run BLAST on NCBI

transcript from alignment at sc0006576:1..820

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00044971 ID=TCONS_00044971|Name=TCONS_00044971|organism=Clytia hemisphaerica|type=transcript|length=820bp|location=Sequence derived from alignment at sc0006576:1..820 (Clytia hemisphaerica)
CGAAGggtattacgtcactttcgttttctaccCGTTGCATTTGCAACCGA
TCGCATTCGCGAATAACCCCGTGCAATTGcaaggatgtgcctgactggcA
ATCAATACATGAGCCAATCGACAATATAAGTGACATAAACAAATCACTCT
CAACAATGAAATTACAGTTTTCTAAACAAGTTTCAGTTGGATTATCAATA
GCAGATTGAGTAGAAATGTTCAATTTCTTAGCAGAAGCACCAGAACGTTG
CGCGTCAGCGTTGATTTCATCAGTTGTCGGTGTACTACTTTTCGCTGTCT
TGACATACCGCGTTCCAGCAAATCCTTTCCTTTTACTGCTCCTTGTGTAT
GTATATCTCTTTGTAGATCCCATTTCATTATATTTATAACCTTCTTTCAC
CACAAAAACAACTGCAATACAAAACTGGAGAAGACACTAAAATGTTGTGA
CTTTTCTCCAGGAGCTCCAATTTCAGAACGCTGTTGTGTGGATTTGCAGT
ATAACTAATAGCTCAAAATGGTCGTCAGAGATACACGGGCGTATTGGGCG
TAAAATGGCGGAAATTTAAACTCTCTACGGCATCAGGAACAGGAGGTGTT
ACGAAAATTGCGTTGCCTTAAAGCAGAGAGCATAAGCTTTCCAGCGATAT
ATTAAACtctattttgacgaaaatgtcaaaaaacaccATTTAGTTNTCAt
attttctcatttctgactgagttttcatacctgtcaatcatttgtccatc
aatttcgaccagtctaattttcgcaccgagtgggattcgaaccaccacca
aagaaagaccttcagattcg

Coding sequence (CDS) from alignment at sc0006576:1..820

>TCONS_00044971 ID=TCONS_00044971|Name=TCONS_00044971|organism=Clytia hemisphaerica|type=CDS|length=372bp|location=Sequence derived from alignment at sc0006576:1..820 (Clytia hemisphaerica)
GAAGggtattacgtcactttcgttttctaccCGTTGCATTTGCAACCGAT
CGCATTCGCGAATAACCCCGTGCAATTGcaaggatgtgcctgactggcAA
TCAATACATGAGCCAATCGACAATATAAGTGACATAAACAAATCACTCTC
AACAATGAAATTACAGTTTTCTAAACAAGTTTCAGTTGGATTATCAATAG
CAGATTGAGTAGAAATGTTCAATTTCTTAGCAGAAGCACCAGAACGTTGC
GCGTCAGCGTTGATTTCATCAGTTGTCGGTGTACTACTTTTCGCTGTCTT
GACATACCGCGTTCCAGCAAATCCTTTCCTTTTACTGCTCCTTGTGTATG
TATATCTCTTTGTAGATCCCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_028562XLOC_028562Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044971-proteinTCONS_00044971-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044971-exon-sc0006576-1491911889:1..820TCONS_00044971-exon-sc0006576-1491911889:1..820Clytia hemisphaericaexon
TCONS_00044971-exon-sc0006576-1510915933:1..820TCONS_00044971-exon-sc0006576-1510915933:1..820Clytia hemisphaericaexon
TCONS_00044971-exon-sc0006576-1575043694:1..820TCONS_00044971-exon-sc0006576-1575043694:1..820Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0006576supercontigsc0006576:1..820 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.79446	2.55337	1.60369	1.58375	5.41309	3.90934	3.66013	4.41509	3.21373	3.67507	3.15887	5.28387	4.38442	6.14539	3.3812	2.89387	2.96255	4.69242	4.8586	3.8086	4.57957	3.76339	2.54948	2.61021	4.28871	2.96114	1.99984	1.43871	1.49367	0.889958
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00044971 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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