TCONS_00044961 (transcript) - C. hemisphaerica

Overview
NameTCONS_00044961
Unique NameTCONS_00044961
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length405

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00044961 ID=TCONS_00044961|Name=TCONS_00044961|organism=Clytia hemisphaerica|type=transcript|length=405bp
AATACTTTTGATTGAAATCAAACTCTTTGTCTAATGCATCCAGCTGATTT
GTCAGATCCATGATAACCtccattttttcatcatttttatttgaatcgAT
AACTTTATTAATATAAACAATTGAATCATAGATCTTCTTCACAGAAGCAG
TAAACTTTTCAAATGATTGCATATTCGTCTGTTTGTTTATTTGGGCGATC
AGTTGCTCTTCCCTCCTTgcaatgttttttctgatttcattGAAAGCCTG
TTTGATCAATGCAACAGATTTCTTATCAGCTTCGATTATTTTCTCCTGAA
AATCTCTGCCATCATACATATGATTAAGCAAATCATTACAAAACAGAtca
gcttttttcaattttttggttAAAACATTTTTGGCTTTAGTAGTTGCTTC
AGCTA
Run BLAST on NCBI

protein sequence of TCONS_00044961-protein

>TCONS_00044961-protein ID=TCONS_00044961-protein|Name=TCONS_00044961-protein|organism=Clytia hemisphaerica|type=polypeptide|length=134bp
AEATTKAKNVLTKKLKKADLFCNDLLNHMYDGRDFQEKIIEADKKSVALI
KQAFNEIRKNIARREEQLIAQINKQTNMQSFEKFTASVKKIYDSIVYINK
VIDSNKNDEKMEVIMDLTNQLDALDKEFDFNQKY
Run BLAST on NCBI

transcript from alignment at sc0006544:2..406

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00044961 ID=TCONS_00044961|Name=TCONS_00044961|organism=Clytia hemisphaerica|type=transcript|length=405bp|location=Sequence derived from alignment at sc0006544:2..406 (Clytia hemisphaerica)
TAGCTGAAGCAACTACTAAAGCCAAAAATGTTTTaaccaaaaaattgaaa
aaagctgaTCTGTTTTGTAATGATTTGCTTAATCATATGTATGATGGCAG
AGATTTTCAGGAGAAAATAATCGAAGCTGATAAGAAATCTGTTGCATTGA
TCAAACAGGCTTTCaatgaaatcagaaaaaacattgcAAGGAGGGAAGAG
CAACTGATCGCCCAAATAAACAAACAGACGAATATGCAATCATTTGAAAA
GTTTACTGCTTCTGTGAAGAAGATCTATGATTCAATTGTTTATATTAATA
AAGTTATcgattcaaataaaaatgatgaaaaaatggaGGTTATCATGGAT
CTGACAAATCAGCTGGATGCATTAGACAAAGAGTTTGATTTCAATCAAAA
GTATT

Coding sequence (CDS) from alignment at sc0006544:2..406

>TCONS_00044961 ID=TCONS_00044961|Name=TCONS_00044961|organism=Clytia hemisphaerica|type=CDS|length=402bp|location=Sequence derived from alignment at sc0006544:2..406 (Clytia hemisphaerica)
GCTGAAGCAACTACTAAAGCCAAAAATGTTTTaaccaaaaaattgaaaaa
agctgaTCTGTTTTGTAATGATTTGCTTAATCATATGTATGATGGCAGAG
ATTTTCAGGAGAAAATAATCGAAGCTGATAAGAAATCTGTTGCATTGATC
AAACAGGCTTTCaatgaaatcagaaaaaacattgcAAGGAGGGAAGAGCA
ACTGATCGCCCAAATAAACAAACAGACGAATATGCAATCATTTGAAAAGT
TTACTGCTTCTGTGAAGAAGATCTATGATTCAATTGTTTATATTAATAAA
GTTATcgattcaaataaaaatgatgaaaaaatggaGGTTATCATGGATCT
GACAAATCAGCTGGATGCATTAGACAAAGAGTTTGATTTCAATCAAAAGT
AT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_028552XLOC_028552Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044961-proteinTCONS_00044961-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044961-exon-sc0006544-1491911889:2..406TCONS_00044961-exon-sc0006544-1491911889:2..406Clytia hemisphaericaexon
TCONS_00044961-exon-sc0006544-1510915933:2..406TCONS_00044961-exon-sc0006544-1510915933:2..406Clytia hemisphaericaexon
TCONS_00044961-exon-sc0006544-1575043694:2..406TCONS_00044961-exon-sc0006544-1575043694:2..406Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0006544supercontigsc0006544:2..406 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.81009	1.05907	0.409895	0	1.2205	1.54313	0.232716	0.871462	1.06773	1.88936	1.2837	0.843856	0.481533	2.6254	1.95287	2.75754	0.407648	1.25348	5.77249	6.0405	1.7501	2.817	2.90558	2.64159	0	0	13.4028	10.5954	5.02264	2.66099
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00044961 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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