TCONS_00044960 (transcript) - C. hemisphaerica

Overview
NameTCONS_00044960
Unique NameTCONS_00044960
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length419

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00044960 ID=TCONS_00044960|Name=TCONS_00044960|organism=Clytia hemisphaerica|type=transcript|length=419bp
ATGGTCTGTAAACCCAAGCCAAAGCAAAATTAAATGCACGTTAATTTGAA
AACAGTTTTCATACCTGTAAAGGAGGGCATAATTCAGTCCTTGATGGTTG
AAATCTTCGTTTGTGGTGATCTTTTGATTCGTTGTAGGCTGTTTgagaga
aaatgtcaaaaattgaccaaagatttttagaaaaatgctgatCTTTTTCG
CGGCAATCGAGTATTTTTAATAGTGACGCGAAGCGTACACGGAGGCTTGT
AAAAATATATTACAGAGTTTTGGCCGCGCGCACCCTGGAGAAAAGATCTC
TTCGAAACCTCTAAAATCATTGcctgaaacatcaaaacaaacaaaaaaat
tttgatcgaaatcgaaagtggaaaaaCACACAAAGGTTGAGACTCAACTT
GATTGAGTTCTTCGAGGGC
Run BLAST on NCBI

transcript from alignment at sc0006543:1056..1474

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00044960 ID=TCONS_00044960|Name=TCONS_00044960|organism=Clytia hemisphaerica|type=transcript|length=419bp|location=Sequence derived from alignment at sc0006543:1056..1474 (Clytia hemisphaerica)
GCCCTCGAAGAACTCAATCAAGTTGAGTCTCAACCTTTGTGTGtttttcc
actttcgatttcgatcaaaatttttttgtttgttttgatgtttcaggCAA
TGATTTTAGAGGTTTCGAAGAGATCTTTTCTCCAGGGTGCGCGCGGCCAA
AACTCTGTAATATATTTTTACAAGCCTCCGTGTACGCTTCGCGTCACTAT
TAAAAATACTCGATTGCCGCGAAAAAGatcagcatttttctaaaaatctt
tggtcaatttttgacattttctctcAAACAGCCTACAACGAATCAAAAGA
TCACCACAAACGAAGATTTCAACCATCAAGGACTGAATTATGCCCTCCTT
TACAGGTATGAAAACTGTTTTCAAATTAACGTGCATTTAATTTTGCTTTG
GCTTGGGTTTACAGACCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_028551XLOC_028551Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044960-exon-sc0006543-1491911889:1056..1474TCONS_00044960-exon-sc0006543-1491911889:1056..1474Clytia hemisphaericaexon
TCONS_00044960-exon-sc0006543-1510915933:1056..1474TCONS_00044960-exon-sc0006543-1510915933:1056..1474Clytia hemisphaericaexon
TCONS_00044960-exon-sc0006543-1575043694:1056..1474TCONS_00044960-exon-sc0006543-1575043694:1056..1474Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0006543supercontigsc0006543:1056..1474 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
5.06825	3.78913	1.53027	3.36855	2.96175	1.62029	1.73761	2.23675	1.13891	1.58707	2.39625	0.675085	0	0.700108	0.0959306	0.308845	0.507295	1.03992	0.179589	0.375853	0.490027	0.478036	2.90558	1.23274	3.26493	1.61882	1.38992	2.22503	1.5001	1.71941
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00044960 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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