TCONS_00044959 (transcript) - C. hemisphaerica

Overview
NameTCONS_00044959
Unique NameTCONS_00044959
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length173

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00044959 ID=TCONS_00044959|Name=TCONS_00044959|organism=Clytia hemisphaerica|type=transcript|length=173bp
CGTGTCATCTGTACTTGAACTGCTTGCAGAAGTTAAGACAATTAAGATCA
GGTTTTTAGGAGAGACTGCTTGTAAAGGTATACTTATTTCAAATAATCTC
TGATTTTTTGGTTTATCAATTTAGCCTTTCTGGTAGCAATTAAAAAAGgt
ttccaaatatattttccttttcG
Run BLAST on NCBI

transcript from alignment at sc0006543:526..698

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00044959 ID=TCONS_00044959|Name=TCONS_00044959|organism=Clytia hemisphaerica|type=transcript|length=173bp|location=Sequence derived from alignment at sc0006543:526..698 (Clytia hemisphaerica)
CgaaaaggaaaatatatttggaaacCTTTTTTAATTGCTACCAGAAAGGC
TAAATTGATAAACCAAAAAATCAGAGATTATTTGAAATAAGTATACCTTT
ACAAGCAGTCTCTCCTAAAAACCTGATCTTAATTGTCTTAACTTCTGCAA
GCAGTTCAAGTACAGATGACACG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_028550XLOC_028550Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044959-exon-sc0006543-1491911889:526..698TCONS_00044959-exon-sc0006543-1491911889:526..698Clytia hemisphaericaexon
TCONS_00044959-exon-sc0006543-1510915933:526..698TCONS_00044959-exon-sc0006543-1510915933:526..698Clytia hemisphaericaexon
TCONS_00044959-exon-sc0006543-1575043694:526..698TCONS_00044959-exon-sc0006543-1575043694:526..698Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0006543supercontigsc0006543:526..698 .
Expression
No biomaterial libraries express this feature.
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00044959 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top