TCONS_00044955 (transcript) - C. hemisphaerica

Overview
NameTCONS_00044955
Unique NameTCONS_00044955
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length751

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00044955 ID=TCONS_00044955|Name=TCONS_00044955|organism=Clytia hemisphaerica|type=transcript|length=751bp
ctacttattgCAAATTAGAAAATAATGAGGCTATTAGAGGGAAAGTCTTA
AGGCGGTTTTTCAGACCAATTTTCATTCTGGGAATacattaaaaaagaat
gaagttgGTTGCTCAAAGCTATGAGTGACTTTAAGTCTTTTGAAGTTGCC
ATGGTTTcatttatttgcataagcctAAAAAGTTAACATTGCAAATAAGA
TCAAATCTgttctaaagtttttaaaaaatgtgaTATCTCGGAACTAATAC
ACTTTTCCTGCAATTCCCACTTCTCAGAAATGACCCGGGAAAATGCACGC
TTCACCATTGTGTAAAAAATTGCTTCGGAGGTAAACAAACATGTTTTTGA
CTATAAGGGTTAGGGcaagtgggttttcagcttccTAATTCTTGATACTG
ATATCTTTtagggaaaatattttcagggttaTATAATATCATAAATAGAA
AgaacatatcaaaatttgaaattgaataaGAAATTGAGTTAAAGAACAGT
AGTAAGAGCTTGCAGTATTTACAATAACCTAAACAAAAAGATGCTAAAAT
ATTGCTGAAACGACATTCAATGtgtgaaaaagagaaaatatacaAAGAAG
AAGTTATACTTATACAGAAGTTGCATACTTTGCAAATCTTAACTTAGTAC
CTAAGAAAGTAAGGAACTCAATAACGAACTTTGAGACTGACACTCtctga
aaaataaggaactccatgCACCAGGCTCGGGGCCAAATTaaaaggttcct
t
Run BLAST on NCBI

transcript from alignment at sc0006525:676..1426

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00044955 ID=TCONS_00044955|Name=TCONS_00044955|organism=Clytia hemisphaerica|type=transcript|length=751bp|location=Sequence derived from alignment at sc0006525:676..1426 (Clytia hemisphaerica)
aaggaaccttttAATTTGGCCCCGAGCCTGGTGcatggagttccttattt
ttcagaGAGTGTCAGTCTCAAAGTTCGTTATTGAGTTCCTTACTTTCTTA
GGTACTAAGTTAAGATTTGCAAAGTATGCAACTTCTGTATAAGTATAACT
TCTTCTTtgtatattttctctttttcacaCATTGAATGTCGTTTCAGCAA
TATTTTAGCATCTTTTTGTTTAGGTTATTGTAAATACTGCAAGCTCTTAC
TACTGTTCTTTAACTCAATTTCttattcaatttcaaattttgatatgttc
TTTCTATTTATGATATTATAtaaccctgaaaatattttccctaAAAGATA
TCAGTATCAAGAATTAggaagctgaaaacccacttgCCCTAACCCTTATA
GTCAAAAACATGTTTGTTTACCTCCGAAGCAATTTTTTACACAATGGTGA
AGCGTGCATTTTCCCGGGTCATTTCTGAGAAGTGGGAATTGCAGGAAAAG
TGTATTAGTTCCGAGATAtcacattttttaaaaactttagaacAGATTTG
ATCTTATTTGCAATGTTAACTTTTTaggcttatgcaaataaatgAAACCA
TGGCAACTTCAAAAGACTTAAAGTCACTCATAGCTTTGAGCAACcaactt
cattcttttttaatgtATTCCCAGAATGAAAATTGGTCTGAAAAACCGCC
TTAAGACTTTCCCTCTAATAGCCTCATTATTTTCTAATTTGcaataagta
g
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_028546XLOC_028546Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044955-exon-sc0006525-1491911889:676..1426TCONS_00044955-exon-sc0006525-1491911889:676..1426Clytia hemisphaericaexon
TCONS_00044955-exon-sc0006525-1510915933:676..1426TCONS_00044955-exon-sc0006525-1510915933:676..1426Clytia hemisphaericaexon
TCONS_00044955-exon-sc0006525-1575043694:676..1426TCONS_00044955-exon-sc0006525-1575043694:676..1426Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0006525supercontigsc0006525:676..1426 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0654571	0.063831	0.222342	0.0725089	0	0	0	0	0	0	0	0	0	0.0904198	0	0	0	0	0	0	0	0	0	0	0	0.0627218	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00044955 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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