TCONS_00044952 (transcript) - C. hemisphaerica

Overview
NameTCONS_00044952
Unique NameTCONS_00044952
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1633

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00044952 ID=TCONS_00044952|Name=TCONS_00044952|organism=Clytia hemisphaerica|type=transcript|length=1633bp
GCTTTCACTaaattaaaatttcttctcATTACTGAGACAGATTACTGACA
CGTGTGACCAAGTATAGTCATCAaaaaggtttggttgtgttgctTCACTC
GGATCGGAAATCCACGACCAACCACAGGACAGGGGAATCCATCCACAGGA
GCGAACAGCAGACAAACAGACTTCAACACCAAGACTCTTTAGCCCTTTAT
CACAGAGAAGGGTTCAGTGAAATCATTATTCTACAAGCAGAAAAGTACCC
AAGAACCCAAACATCATGAGCACTACGAAAATCGACAAAGATAAAACGTA
TGTGAGTAGTGTCATTAGAGAATATCGTATTTGTCTCCCTATGTCAGTTG
AAGAGTACCACATAGGCCAACTGTATGGTGTTGCTGAGGCTAGCAAGAAT
GAAACTGGAGGGGGAGAAGGTGTTGAGGTTGTTATTAATGAACCAAGAGA
AGAGGTTATTCCAGGGGAAGGTACTGGAGCTGTTATGAAATCACAGTACA
CTCATAAGGTTTTTCACCTTGAATCTAAAGTTCCTGCCATCCTTCGCAAG
TTAGCCCCAAGTGGTGCACTTACACTTCACGAAAAAGCATGGAATGCGTA
CCCTTACTGTCGCACTGTCTACACCAATGACTATATGAAGGATGGATTTC
ATATTGTTATTGAAACAAGACATGAAGCTGGAACTGGAGATATTGATAAC
GTACATAGTTTATCCCCAAACCAATACAAGAAGAGGGTTGTTGACAGGAT
CGATATTGCCAATGATAAATGTGATACCCGAGATTACAAGGAGACAGAAG
ATCCAACTAAattcaaatcagaaaaaacaggTCGTGGGCCCCTTCAAGGT
GCTGGATGGGAAAAGAAACAAGATCCTGTGATGACGTGTTATAAATTATA
TCACATAGAATTTAAATGGATGGGCTTGCAATCAGTTGTCGAAAATATGA
TTGTCAAAACTGTCCGCAGGTTGCTCTTTAATTTCCATCGTCAGGTATTT
TGTTGGATTGACAAATGGCACGGTATGACAATTGAAGATATCAGAGTATT
AGAAGCAAAAACAAAGGAAGATCTTGATAAGATGAGAGTAACAGGAGAAG
TTAAAGGAATGAGGGAAAAGTAGAGATTTTCACTTAGATAAATGAAACTT
TACTACAAACTTTATTGGATATCTAATTTTCAAATGCCAatttataaaga
aaatcaatgaaATGATTTAGGCTTGACAGAACTGATTATGAAATTACAGT
AGGTTGGTGCTATTTCAGATACCACCATCCTTTTCTGTCAACATATATAT
CTACAAAACAGTCGAAGCAAACTTTCTGAACATATTATGAACAAACTCAT
TGATCAAATTAAACTTTTGGGATTATtaagtttttctataaaaaaacagA
TTTTGGCAATGACTAAATGAGGAAGATGGTATCCAAAATAGTCACTAACT
TATGGCAGCCTGGGACGTTATGATTTTCtatattacttttttgttcatag
tataattattgaatttggaccttttttttgaagttctttTTTTCTGATCC
TAccctattttaattttttcacataactgaaaaagtaaaaaaggatCCTT
TTGGTAATCACAACCTCCATCCTTTTTTTGCCT
Run BLAST on NCBI

protein sequence of TCONS_00044952-protein

>TCONS_00044952-protein ID=TCONS_00044952-protein|Name=TCONS_00044952-protein|organism=Clytia hemisphaerica|type=polypeptide|length=285bp
MSTTKIDKDKTYVSSVIREYRICLPMSVEEYHIGQLYGVAEASKNETGGG
EGVEVVINEPREEVIPGEGTGAVMKSQYTHKVFHLESKVPAILRKLAPSG
ALTLHEKAWNAYPYCRTVYTNDYMKDGFHIVIETRHEAGTGDIDNVHSLS
PNQYKKRVVDRIDIANDKCDTRDYKETEDPTKFKSEKTGRGPLQGAGWEK
KQDPVMTCYKLYHIEFKWMGLQSVVENMIVKTVRRLLFNFHRQVFCWIDK
WHGMTIEDIRVLEAKTKEDLDKMRVTGEVKGMREK
Run BLAST on NCBI

transcript from alignment at sc0006522:1..1633

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00044952 ID=TCONS_00044952|Name=TCONS_00044952|organism=Clytia hemisphaerica|type=transcript|length=1633bp|location=Sequence derived from alignment at sc0006522:1..1633 (Clytia hemisphaerica)
AGGCAAAAAAAGGATGGAGGTTGTGATTACCAAAAGGatccttttttact
ttttcagttatgtgaaaaaattaaaatagggTAGGATCAGAAAAaaagaa
cttcaaaaaaaaggtccaaattcaataattatactatgaacaaaaaagta
atataGAAAATCATAACGTCCCAGGCTGCCATAAGTTAGTGACTATTTTG
GATACCATCTTCCTCATTTAGTCATTGCCAAAATctgtttttttatagaa
aaacttaATAATCCCAAAAGTTTAATTTGATCAATGAGTTTGTTCATAAT
ATGTTCAGAAAGTTTGCTTCGACTGTTTTGTAGATATATATGTTGACAGA
AAAGGATGGTGGTATCTGAAATAGCACCAACCTACTGTAATTTCATAATC
AGTTCTGTCAAGCCTAAATCATttcattgattttctttataaatTGGCAT
TTGAAAATTAGATATCCAATAAAGTTTGTAGTAAAGTTTCATTTATCTAA
GTGAAAATCTCTACTTTTCCCTCATTCCTTTAACTTCTCCTGTTACTCTC
ATCTTATCAAGATCTTCCTTTGTTTTTGCTTCTAATACTCTGATATCTTC
AATTGTCATACCGTGCCATTTGTCAATCCAACAAAATACCTGACGATGGA
AATTAAAGAGCAACCTGCGGACAGTTTTGACAATCATATTTTCGACAACT
GATTGCAAGCCCATCCATTTAAATTCTATGTGATATAATTTATAACACGT
CATCACAGGATCTTGTTTCTTTTCCCATCCAGCACCTTGAAGGGGCCCAC
GAcctgttttttctgatttgaatTTAGTTGGATCTTCTGTCTCCTTGTAA
TCTCGGGTATCACATTTATCATTGGCAATATCGATCCTGTCAACAACCCT
CTTCTTGTATTGGTTTGGGGATAAACTATGTACGTTATCAATATCTCCAG
TTCCAGCTTCATGTCTTGTTTCAATAACAATATGAAATCCATCCTTCATA
TAGTCATTGGTGTAGACAGTGCGACAGTAAGGGTACGCATTCCATGCTTT
TTCGTGAAGTGTAAGTGCACCACTTGGGGCTAACTTGCGAAGGATGGCAG
GAACTTTAGATTCAAGGTGAAAAACCTTATGAGTGTACTGTGATTTCATA
ACAGCTCCAGTACCTTCCCCTGGAATAACCTCTTCTCTTGGTTCATTAAT
AACAACCTCAACACCTTCTCCCCCTCCAGTTTCATTCTTGCTAGCCTCAG
CAACACCATACAGTTGGCCTATGTGGTACTCTTCAACTGACATAGGGAGA
CAAATACGATATTCTCTAATGACACTACTCACATACGTTTTATCTTTGTC
GATTTTCGTAGTGCTCATGATGTTTGGGTTCTTGGGTACTTTTCTGCTTG
TAGAATAATGATTTCACTGAACCCTTCTCTGTGATAAAGGGCTAAAGAGT
CTTGGTGTTGAAGTCTGTTTGTCTGCTGTTCGCTCCTGTGGATGGATTCC
CCTGTCCTGTGGTTGGTCGTGGATTTCCGATCCGAGTGAagcaacacaac
caaaccttttTGATGACTATACTTGGTCACACGTGTCAGTAATCTGTCTC
AGTAATgagaagaaattttaatttAGTGAAAGC

Coding sequence (CDS) from alignment at sc0006522:1..1633

>TCONS_00044952 ID=TCONS_00044952|Name=TCONS_00044952|organism=Clytia hemisphaerica|type=CDS|length=858bp|location=Sequence derived from alignment at sc0006522:1..1633 (Clytia hemisphaerica)
CTACTTTTCCCTCATTCCTTTAACTTCTCCTGTTACTCTCATCTTATCAA
GATCTTCCTTTGTTTTTGCTTCTAATACTCTGATATCTTCAATTGTCATA
CCGTGCCATTTGTCAATCCAACAAAATACCTGACGATGGAAATTAAAGAG
CAACCTGCGGACAGTTTTGACAATCATATTTTCGACAACTGATTGCAAGC
CCATCCATTTAAATTCTATGTGATATAATTTATAACACGTCATCACAGGA
TCTTGTTTCTTTTCCCATCCAGCACCTTGAAGGGGCCCACGAcctgtttt
ttctgatttgaatTTAGTTGGATCTTCTGTCTCCTTGTAATCTCGGGTAT
CACATTTATCATTGGCAATATCGATCCTGTCAACAACCCTCTTCTTGTAT
TGGTTTGGGGATAAACTATGTACGTTATCAATATCTCCAGTTCCAGCTTC
ATGTCTTGTTTCAATAACAATATGAAATCCATCCTTCATATAGTCATTGG
TGTAGACAGTGCGACAGTAAGGGTACGCATTCCATGCTTTTTCGTGAAGT
GTAAGTGCACCACTTGGGGCTAACTTGCGAAGGATGGCAGGAACTTTAGA
TTCAAGGTGAAAAACCTTATGAGTGTACTGTGATTTCATAACAGCTCCAG
TACCTTCCCCTGGAATAACCTCTTCTCTTGGTTCATTAATAACAACCTCA
ACACCTTCTCCCCCTCCAGTTTCATTCTTGCTAGCCTCAGCAACACCATA
CAGTTGGCCTATGTGGTACTCTTCAACTGACATAGGGAGACAAATACGAT
ATTCTCTAATGACACTACTCACATACGTTTTATCTTTGTCGATTTTCGTA
GTGCTCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_028543XLOC_028543Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044952-proteinTCONS_00044952-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044952-exon-sc0006522-1491911889:1..1633TCONS_00044952-exon-sc0006522-1491911889:1..1633Clytia hemisphaericaexon
TCONS_00044952-exon-sc0006522-1510915933:1..1633TCONS_00044952-exon-sc0006522-1510915933:1..1633Clytia hemisphaericaexon
TCONS_00044952-exon-sc0006522-1575043694:1..1633TCONS_00044952-exon-sc0006522-1575043694:1..1633Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0006522supercontigsc0006522:1..1633 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
316.659	323.296	166.998	157.668	152.401	116.527	162.974	176.474	140.328	132.913	121.764	122.471	178.19	167.861	162.889	176.673	145.677	133.538	122.516	138.32	122.225	121.783	273.691	261.941	133.238	139.228	179.044	165.122	209.857	205.669
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR001666PI_transfer
IPR023393START-like_dom
Vocabulary: Biological Process
TermDefinition
GO:0006810transport
Vocabulary: Cellular Component
TermDefinition
GO:0005622intracellular
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006810 transport
cellular_component GO:0005622 intracellular
Blast
[Close]
BLAST of TCONS_00044952 vs. Swiss-Prot (Human)
Match: PIPNA (Phosphatidylinositol transfer protein alpha isoform OS=Homo sapiens GN=PITPNA PE=1 SV=2)

HSP 1 Score: 278.1 bits (710), Expect = 9.338e-89
Identity = 156/273 (57.14%), Postives = 193/273 (70.70%), Query Frame = 2 
Query:  311 VIREYRICLPMSVEEYHIGQLYGVAEASKNXXXXXXXXXXXINEPREEVIPGEGTGAVMKSQYTHKVFHLESKVPAILRKLAPSGALTLHEKAWNAYPYCRTVYTNDYMKDGFHIVIETRHEAGTGDIDNVHSLSPNQYKKRVVDRIDIAN-DKCDTRDYKETEDPTKFKSEKTGRGPLQGAGWE-----KKQDPVMTCYKLYHIEFKWMGLQSVVENMIVKTVRRLLFNFHRQVFCWIDKWHGMTIEDIRVLEAKTKEDLDKMRVTGEVKGM 1111
            +++EYR+ LP+SV+EY +GQLY VAEASKNETGGGEGVEV++NEP E+   GE      K QYTHK++HL+SKVP  +R LAP GAL +HEKAWNAYPYCRTV TN+YMK+ F I IET H+   G  +NVH L P  +K      IDIA+  +  ++DYK  EDP KFKS KTGRGPL G  W+     +K  P M  YKL  ++FKW GLQ+ VEN I K  RRL  NFHRQ+FCW+DKW  +T++DIR +E +TK  LD+MR    VKGM
Sbjct:    3 LLKEYRVILPVSVDEYQVGQLYSVAEASKNETGGGEGVEVLVNEPYEK--DGE------KGQYTHKIYHLQSKVPTFVRMLAPEGALNIHEKAWNAYPYCRTVITNEYMKEDFLIKIETWHKPDLGTQENVHKLEPEAWKHVEAVYIDIADRSQVLSKDYKAEEDPAKFKSIKTGRGPL-GPNWKQELVNQKDCPYMCAYKLVTVKFKWWGLQNKVENFIHKQERRLFTNFHRQLFCWLDKWVDLTMDDIRRMEEETKRQLDEMRQKDPVKGM 266
The following BLAST results are available for this feature:
BLAST of TCONS_00044952 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
PIPNA9.338e-8957.14Phosphatidylinositol transfer protein alpha isofor... [more]
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