TCONS_00044951 (transcript) - C. hemisphaerica

Overview
NameTCONS_00044951
Unique NameTCONS_00044951
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length531

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00044951 ID=TCONS_00044951|Name=TCONS_00044951|organism=Clytia hemisphaerica|type=transcript|length=531bp
ttgaagtAACAAGAAGTACCTACGATCATCAGAATTTTTCATGAAGTCAT
ACATCATAAGTAATCTATCCGAATATAACGAATTCAAGCGACAGTATAAA
GaGGGAGAAATCTGGATTTGCAAACCGTCTGGTCGTAACCAAGGGAAAGG
CATATTTCTTGTTACAAGTCTAGAAGGCTTACAACGTGAACTATCTGATC
GAAAGTGTCCAAAGATGAAAATCCAAGAACGAATCATTCAAAAGTATATC
AAGAAACCTTTGCTTATCAACGGTTTCAAATTTGACATTCGAGTCTACAT
GTTAATTGCTTCGACTTGTCCGTATATTGCATTCTATCATAAAGGTTACG
TCCGCTTATCTTGTGTACCGTATACTGTTGATGATTTAGATATACACGCA
CATCTTACAAATCAGGTAAATTAATTTTAATCTCTCTTCTTTGTCATAAA
GAAACCTCAATacgccttttcgaccgtagccgccaattgccgcgcgggca
tttttttgtccgttttaccaccctaaatcga
Run BLAST on NCBI

protein sequence of TCONS_00044951-protein

>TCONS_00044951-protein ID=TCONS_00044951-protein|Name=TCONS_00044951-protein|organism=Clytia hemisphaerica|type=polypeptide|length=127bp
MKSYIISNLSEYNEFKRQYKEGEIWICKPSGRNQGKGIFLVTSLEGLQRE
LSDRKCPKMKIQERIIQKYIKKPLLINGFKFDIRVYMLIASTCPYIAFYH
KGYVRLSCVPYTVDDLDIHAHLTNQVN
Run BLAST on NCBI

transcript from alignment at sc0006521:193..1695-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00044951 ID=TCONS_00044951|Name=TCONS_00044951|organism=Clytia hemisphaerica|type=transcript|length=1503bp|location=Sequence derived from alignment at sc0006521:193..1695- (Clytia hemisphaerica)
TTGAAGTAACAAGAAGTACCTACGATCATCAGAATTTTTCATGAAGTCAT
ACATCATAAGTAATCTATCCGAATATAACGAATTCAAGCGACAGTATAAA
GGTTAGTGCCTAATCACCTACACTTAAGTCCATCTTGTTTTTGAGTGAAT
TTATAAAGTTCCATTGACAACTGGCTCAGTACGCAAATTTAGTTTAGACT
AACACTTTCAATAATCTAAGAAATTACTAATCTCTCCTTGTATTTTGAGA
CTAAGAAGAGAGGAAAACCCTTTTTCTCATCGAGAGAAGAAGCAGAATAT
CAAGCCGCAAATTTGTTTTCATATAGGTATTTTAAGAATTCCAGGGAAAG
GATTGGCGTCCTACCCTTACTTCGGGTGGACATCTAGAGAAAAGAGAGCC
TTCGATTTGCCCTCGACTGGGGTTGCAGACTGAGTTATAAGTAACCAAAG
AGTAAGCTCTTCTTAAATTATTTAAACAGTCTTTTACTCTGCTTTTTTAC
TTCTTTTGTTTATTTAGAGGGAGAAATCTGGATTTGCAAACCGTCTGGTC
GTAACCAAGGGAAAGGCATATTTCTTGTTACAAGTCTAGAAGGCTTACAA
CGTGAACTATCTGATCGAAAGTGTCCAAAGATGAAAATCCAAGAACGAAT
CATTCAAAAGTAGGCGATATTCAAGTTATAAGATAGACTGTAGTTTGTGG
TCTAGTTTGGAGGTACTTTTTTACTTCCACGACTACCGTCAAGAACGCTG
CGAAACCCCAAAGAAAAAAAATCAGTTCCTTAAGGGTGGATTTTTTTGGA
AAAAGTAAAACATTTCGAATATATAATACCTACAGTTTCTTTCCCATTTA
GGGTTCATTTTTTTCGGTAGCTGTGCGTTGTACCCTCGGGACAGCATTGA
AGAAATAAAATTTAAATTTGAATCAAGCATAGCGTACCATGTGGTTGGCT
TCGGAATATTTTTTTCATAAAATATCCGTTGTACCGGCATAAAATTTCTC
AATTCCGCTAAACACTTTCCTGACGAGTACCGGTAATTTATCCGACAAAT
CCCGGAATACTGTTCAATTCCGGATTTGATGTTCGGGAGCCCCTACCAAA
TCTACCTGAATTACTTACCGTACAACCGGGTTTCTTGGAATACAAAGAAG
AACTTGTCACAAGCATAATACTATATTCAAAAGCATTGAATTTCATGCTT
TTTATGCTTTTTTAGGTATATCAAGAAACCTTTGCTTATCAACGGTTTCA
AATTTGACATTCGAGTCTACATGTTAATTGCTTCGACTTGTCCGTATATT
GCATTCTATCATAAAGGTTACGTCCGCTTATCTTGTGTACCGTATACTGT
TGATGATTTAGATATACACGCACATCTTACAAATCAGGTAAATTAATTTT
AATCTCTCTTCTTTGTCATAAAGAAACCTCAATACGCCTTTTCGACCGTA
GCCGCCAATTGCCGCGCGGGCATTTTTTTGTCCGTTTTACCACCCTAAAT
CGA

Coding sequence (CDS) from alignment at sc0006521:193..1695-

>TCONS_00044951 ID=TCONS_00044951|Name=TCONS_00044951|organism=Clytia hemisphaerica|type=CDS|length=1152bp|location=Sequence derived from alignment at sc0006521:193..1695- (Clytia hemisphaerica)
GTATATCAAGAAACCTTTGCTTATCAACGGTTTCAAATTTGACATTCGAG
TCTACATGTTAATTGCTTCGACTTGTCCGTATATTGCATTCTATCATAAA
GGTTACGTCCGCTTATCTTGTGTACCGTATACTGTTGATGATTTAGATAT
ACACGCACATCTTACAAATCAGGTAAATTAAAGGGAGAAATCTGGATTTG
CAAACCGTCTGGTCGTAACCAAGGGAAAGGCATATTTCTTGTTACAAGTC
TAGAAGGCTTACAACGTGAACTATCTGATCGAAAGTGTCCAAAGATGAAA
ATCCAAGAACGAATCATTCAAAAATGAAGTCATACATCATAAGTAATCTA
TCCGAATATAACGAATTCAAGCGACAGTATAAAGGTATATCAAGAAACCT
TTGCTTATCAACGGTTTCAAATTTGACATTCGAGTCTACATGTTAATTGC
TTCGACTTGTCCGTATATTGCATTCTATCATAAAGGTTACGTCCGCTTAT
CTTGTGTACCGTATACTGTTGATGATTTAGATATACACGCACATCTTACA
AATCAGGTAAATTAAAGGGAGAAATCTGGATTTGCAAACCGTCTGGTCGT
AACCAAGGGAAAGGCATATTTCTTGTTACAAGTCTAGAAGGCTTACAACG
TGAACTATCTGATCGAAAGTGTCCAAAGATGAAAATCCAAGAACGAATCA
TTCAAAAATGAAGTCATACATCATAAGTAATCTATCCGAATATAACGAAT
TCAAGCGACAGTATAAAGGTATATCAAGAAACCTTTGCTTATCAACGGTT
TCAAATTTGACATTCGAGTCTACATGTTAATTGCTTCGACTTGTCCGTAT
ATTGCATTCTATCATAAAGGTTACGTCCGCTTATCTTGTGTACCGTATAC
TGTTGATGATTTAGATATACACGCACATCTTACAAATCAGGTAAATTAAA
GGGAGAAATCTGGATTTGCAAACCGTCTGGTCGTAACCAAGGGAAAGGCA
TATTTCTTGTTACAAGTCTAGAAGGCTTACAACGTGAACTATCTGATCGA
AAGTGTCCAAAGATGAAAATCCAAGAACGAATCATTCAAAAATGAAGTCA
TACATCATAAGTAATCTATCCGAATATAACGAATTCAAGCGACAGTATAA
AG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_028542XLOC_028542Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044951-proteinTCONS_00044951-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044951-exon-sc0006521-1575043694:1595..1695TCONS_00044951-exon-sc0006521-1575043694:1595..1695Clytia hemisphaericaexon
TCONS_00044951-exon-sc0006521-1575043694:1037..1178TCONS_00044951-exon-sc0006521-1575043694:1037..1178Clytia hemisphaericaexon
TCONS_00044951-exon-sc0006521-1575043694:193..480TCONS_00044951-exon-sc0006521-1575043694:193..480Clytia hemisphaericaexon
TCONS_00044951-exon-sc0006521-1510915933:1595..1695TCONS_00044951-exon-sc0006521-1510915933:1595..1695Clytia hemisphaericaexon
TCONS_00044951-exon-sc0006521-1510915933:1037..1178TCONS_00044951-exon-sc0006521-1510915933:1037..1178Clytia hemisphaericaexon
TCONS_00044951-exon-sc0006521-1510915933:193..480TCONS_00044951-exon-sc0006521-1510915933:193..480Clytia hemisphaericaexon
TCONS_00044951-exon-sc0006521-1491911889:1595..1695TCONS_00044951-exon-sc0006521-1491911889:1595..1695Clytia hemisphaericaexon
TCONS_00044951-exon-sc0006521-1491911889:1037..1178TCONS_00044951-exon-sc0006521-1491911889:1037..1178Clytia hemisphaericaexon
TCONS_00044951-exon-sc0006521-1491911889:193..480TCONS_00044951-exon-sc0006521-1491911889:193..480Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0006521supercontigsc0006521:193..1695 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.50718	3.56541	1.03813	1.62667	13.6048	8.96905	10.6416	11.2876	9.60624	8.54981	6.00125	8.91595	7.26408	7.52154	6.23233	7.41717	6.08257	10.1141	6.13269	5.4169	9.36924	9.87686	5.45782	7.78668	14.0849	15.764	5.37303	5.96988	3.98024	6.9015
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR013815ATP_grasp_subdomain_1
IPR004344TTL/TTLL_fam
Vocabulary: Molecular Function
TermDefinition
GO:0003824catalytic activity
GO:0005524ATP binding
Vocabulary: Biological Process
TermDefinition
GO:0006464cellular protein modification process
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006464 cellular protein modification process
molecular_function GO:0005524 ATP binding
molecular_function GO:0003824 catalytic activity
Blast
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BLAST of TCONS_00044951 vs. Swiss-Prot (Human)
Match: TTL10 (Inactive polyglycylase TTLL10 OS=Homo sapiens GN=TTLL10 PE=1 SV=2)

HSP 1 Score: 121.709 bits (304), Expect = 8.832e-32
Identity = 65/161 (40.37%), Postives = 88/161 (54.66%), Query Frame = 2 
Query:   11 KKYLRSSEFFMKSYIISNLSEYNEFKRQYKEGEIWICKPSGRNQGKGIFL------VTSLEGLQRELSD----RKCPKMKIQERIIQKYIKKPLLINGFKFDIRVYMLIASTCPYIAFYHKGYVRLSCVPYTVDDLDIHAHLTNQVN*F*SLFFVIKKPQY 463
            ++ LR  EFF ++Y +    E   F   + E +IWICKP+  NQGKGIFL      V +L+   R + D     K P    Q R++Q+YI+ PLL++G KFD+R Y+LIA T PY+ F+  GY RL+   Y     D+  HLTNQ       F   K P Y
Sbjct:  276 QRVLRMEEFFPETYRLDLKHEREAFFTLFDETQIWICKPTASNQGKGIFLLRNQEEVAALQAKTRSMEDDPIHHKTPFRGPQARVVQRYIQNPLLVDGRKFDVRSYLLIACTTPYMIFFGHGYARLTLSLYDPHSSDLGGHLTNQ-------FMQKKSPLY 429
The following BLAST results are available for this feature:
BLAST of TCONS_00044951 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
TTL108.832e-3240.37Inactive polyglycylase TTLL10 OS=Homo sapiens GN=T... [more]
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