TCONS_00044894 (transcript) - C. hemisphaerica

Overview
NameTCONS_00044894
Unique NameTCONS_00044894
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length721

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00044894 ID=TCONS_00044894|Name=TCONS_00044894|organism=Clytia hemisphaerica|type=transcript|length=721bp
attttaatgaccagctaggtctttcatttgagggctatgcatgttagcct
ccactgatgcaagttacccaatctcacggtatatttTATTTCTGCTTTAG
CGCGCCATGTCTAAACTATTTGATATAATGACCgaaaaaatttaagttag
ccCCCTTTTGAGCTTGAATTTAATCTTTAAAAGTGGACAGCCCTAAAGAA
TGATGAAGACCGAAGTGAAGTAGCTATAATAAAGGCAGGTTAGGTTAAGG
TGTACTTGCCTCAAGTTTTGCAATTCGATTTTGAAGTTTTACTGATGGAA
CAAGAGAATAAGCTTGATTGAACAAAGAAAGTGCAGTATCCAATTCTCCA
TTACGAGCATATTCCTTTGCTTTTGCTGCAAGtcttttggcttcaatctc
gTTGTTTGGCGAAtccattttctattttattctCCCCTGTCCCTGACAGC
ctgagttttcattttttcaataccacttctttgtctaccattttaaaaat
ttcccgcGGTAAAGCTAGGAAACTTCACCTTGAATTTCggccaacaaaca
acaaactcACTTGAAATTCCCAAcctatataaaggtcagtggaaaGATCT
TGATAAAATAAGTGGAGTTCCTAAGCTTGCGCGGGAAATTTGTTGTCCGG
CATGGTTTTATGGTTTAGCTGGGAGACCAAAGGTATTAGCTAGCAAAAGA
TCACTTTCATCAGGACATATT
Run BLAST on NCBI

transcript from alignment at sc0006409:1191..1911

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00044894 ID=TCONS_00044894|Name=TCONS_00044894|organism=Clytia hemisphaerica|type=transcript|length=721bp|location=Sequence derived from alignment at sc0006409:1191..1911 (Clytia hemisphaerica)
AATATGTCCTGATGAAAGTGATCTTTTGCTAGCTAATACCTTTGGTCTCC
CAGCTAAACCATAAAACCATGCCGGACAACAAATTTCCCGCGCAAGCTTA
GGAACTCCACTTATTTTATCAAGATCtttccactgacctttatataggTT
GGGAATTTCAAGTgagtttgttgtttgttggccGAAATTCAAGGTGAAGT
TTCCTAGCTTTACCgcgggaaatttttaaaatggtagacaaagaagtggt
attgaaaaaatgaaaactcagGCTGTCAGGGACAGGGGagaataaaatag
aaaatggaTTCGCCAAACAAcgagattgaagccaaaagaCTTGCAGCAAA
AGCAAAGGAATATGCTCGTAATGGAGAATTGGATACTGCACTTTCTTTGT
TCAATCAAGCTTATTCTCTTGTTCCATCAGTAAAACTTCAAAATCGAATT
GCAAAACTTGAGGCAAGTACACCTTAACCTAACCTGCCTTTATTATAGCT
ACTTCACTTCGGTCTTCATCATTCTTTAGGGCTGTCCACTTTTAAAGATT
AAATTCAAGCTCAAAAGGGggctaacttaaattttttcGGTCATTATATC
AAATAGTTTAGACATGGCGCGCTAAAGCAGAAATAaaatataccgtgaga
ttgggtaacttgcatcagtggaggctaacatgcatagccctcaaatgaaa
gacctagctggtcattaaaat
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_028493XLOC_028493Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044894-exon-sc0006409-1491911889:1191..1911TCONS_00044894-exon-sc0006409-1491911889:1191..1911Clytia hemisphaericaexon
TCONS_00044894-exon-sc0006409-1510915933:1191..1911TCONS_00044894-exon-sc0006409-1510915933:1191..1911Clytia hemisphaericaexon
TCONS_00044894-exon-sc0006409-1575043694:1191..1911TCONS_00044894-exon-sc0006409-1575043694:1191..1911Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0006409supercontigsc0006409:1191..1911 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
12.9185	15.3561	10.2669	6.6035	2.03143	1.19482	1.04679	1.31603	2.15876	3.92497	1.92992	1.79667	2.05945	1.24938	3.01135	3.52617	4.51659	3.6349	0.37885	1.25175	1.9894	2.91152	5.08956	6.46652	1.4036	2.34388	1.71289	1.50311	2.58593	3.20988
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00044894 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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