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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00044844 ID=TCONS_00044844|Name=TCONS_00044844|organism=Clytia hemisphaerica|type=transcript|length=1385bpRun BLAST on NCBI protein sequence of TCONS_00044844-protein >TCONS_00044844-protein ID=TCONS_00044844-protein|Name=TCONS_00044844-protein|organism=Clytia hemisphaerica|type=polypeptide|length=419bp EEVSDSQHQSDSFDIKIELDEILPPTNLTTHATNLQVENPITKTRKNSLVRun BLAST on NCBI transcript from alignment at sc0006308:566..1950 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00044844 ID=TCONS_00044844|Name=TCONS_00044844|organism=Clytia hemisphaerica|type=transcript|length=1385bp|location=Sequence derived from alignment at sc0006308:566..1950 (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0006308:566..1950 >TCONS_00044844 ID=TCONS_00044844|Name=TCONS_00044844|organism=Clytia hemisphaerica|type=CDS|length=1260bp|location=Sequence derived from alignment at sc0006308:566..1950 (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00044844 vs. Swiss-Prot (Human)
Match: ZN568 (Zinc finger protein 568 OS=Homo sapiens GN=ZNF568 PE=2 SV=2) HSP 1 Score: 307.76 bits (787), Expect = 1.166e-96 Identity = 150/317 (47.32%), Postives = 207/317 (65.30%), Query Frame = 2
Query: 167 KSFICKDCGKSFNFNCDLKRHFRIHTGERPFKCQECGKCFTQESSFNAHLKIHSDIESFKCEECGKSFRSKYLLKNHLREHTGEPLSRCQECGKYFKTKNYLINHNRRHTGEKPFKCQECGKFFTRKGSLKDHMRIHTGQKPFKCEECGKCFSWKESLKGHMRVHSGEQPFECKECGKCFSWKESLKGHMRVHSGEQPFECKECGKCFSERSNLYRHMYLHSEIKPFNCAKCGKQFSQRGNLIRHSNMHNGIKSFKCKECGKCFSRKYILNNHIKTHKRIKHVQIEGKEKPFRCNKCGKCFNSLSNFTAHIKSYSKE 1117
K + CKDC K+F+ +L H RIHTGE+P++C+ECGK F+Q+ + H KIH+ + + C ECG++F + H+R HTGE +C +CGK F + I H R HTGEKP+ C ECGK F++ SL HMR HT +KP++C+ECGK FS KE+L H ++H+GE+P+EC ECGK F +L H R+H+GE+P+ C CGK FS++SNL H +H+ KP++C +CGK FSQR NL+ H +H G K FKC ECGK FSR L H+++H EKP+ CNKCGK F+ S H++S++ E
Sbjct: 304 KPYACKDCWKAFSQKSNLIEHERIHTGEKPYECKECGKSFSQKQNLIEHEKIHTGEKPYACNECGRAFSRMSSVTLHMRSHTGEKPYKCNKCGKAFSQCSVFIIHMRSHTGEKPYVCSECGKAFSQSSSLTVHMRNHTAEKPYECKECGKAFSRKENLITHQKIHTGEKPYECSECGKAFIQMSNLIRHQRIHTGEKPYACTVCGKAFSQKSNLTEHEKIHTGEKPYHCNQCGKAFSQRQNLLEHEKIHTGEKPFKCNECGKAFSRISSLTLHVRSHT---------GEKPYECNKCGKAFSQCSLLIIHMRSHTGE 611 HSP 2 Score: 306.22 bits (783), Expect = 4.967e-96 Identity = 156/336 (46.43%), Postives = 208/336 (61.90%), Query Frame = 2
Query: 167 KSFICKDCGKSFNFNCDLKRHFRIHTGERPFKCQECGKCFTQESSFNAHLKIHSDIESFKCEECGKSFRSKYLLKNHLREHTGEPLSRCQECGKYFKTKNYLINHNRRHTGEKPFKCQECGKFFTRKGSLKDHMRIHTGQKPFKCEECGKCFSWKESLKGHMRVHSGEQPFECKECGKCFSWKESLKGHMRVHSGEQPFECKECGKCFSERSNLYRHMYLHSEIKPFNCAKCGKQFSQRGNLIRHSNMHNGIKSFKCKECGKCFSRKYILNNHIKTH-------------------KRIKHVQIEGKEKPFRCNKCGKCFNSLSNFTAHIKSYSKE 1117
K + CK+CGK+F+ +L H +IHTGE+P+KC ECGK F Q S+ H +IH+ + + C++C K+F K L H R HTGE C+ECGK F K LI H + HTGEKP+ C ECG+ F+R S+ HMR HTG+KP+KC +CGK FS HMR H+GE+P+ C ECGK FS SL HMR H+ E+P+ECKECGK FS + NL H +H+ KP+ C++CGK F Q NLIRH +H G K + C CGK FS+K L H K H ++H +I EKPF+CN+CGK F+ +S+ T H++S++ E
Sbjct: 248 KPYECKECGKAFSRKENLITHQKIHTGEKPYKCNECGKAFIQMSNLIRHHRIHTGEKPYACKDCWKAFSQKSNLIEHERIHTGEKPYECKECGKSFSQKQNLIEHEKIHTGEKPYACNECGRAFSRMSSVTLHMRSHTGEKPYKCNKCGKAFSQCSVFIIHMRSHTGEKPYVCSECGKAFSQSSSLTVHMRNHTAEKPYECKECGKAFSRKENLITHQKIHTGEKPYECSECGKAFIQMSNLIRHQRIHTGEKPYACTVCGKAFSQKSNLTEHEKIHTGEKPYHCNQCGKAFSQRQNLLEHEKIHTGEKPFKCNECGKAFSRISSLTLHVRSHTGE 583 HSP 3 Score: 268.855 bits (686), Expect = 7.821e-82 Identity = 134/298 (44.97%), Postives = 189/298 (63.42%), Query Frame = 2
Query: 131 TRKNSLVTKER----GKSFICKDCGKSFNFNCDLKRHFRIHTGERPFKCQECGKCFTQESSFNAHLKIHSDIESFKCEECGKSFRSKYLLKNHLREHTGEPLSRCQECGKYFKTKNYLINHNRRHTGEKPFKCQECGKFFTRKGSLKDHMRIHTGQKPFKCEECGKCFSWKESLKGHMRVHSGEQPFECKECGKCFSWKESLKGHMRVHSGEQPFECKECGKCFSERSNLYRHMYLHSEIKPFNCAKCGKQFSQRGNLIRHSNMHNGIKSFKCKECGKCFSRKYILNNHIKTHKRIKH 1012
++K +L+ E+ K + C +CG++F+ + H R HTGE+P+KC +CGK F+Q S F H++ H+ + + C ECGK+F L H+R HT E C+ECGK F K LI H + HTGEKP++C ECGK F + +L H RIHTG+KP+ C CGK FS K +L H ++H+GE+P+ C +CGK FS +++L H ++H+GE+PF+C ECGK FS S+L H+ H+ KP+ C KCGK FSQ LI H H G K F+C ECGK FS++ L+ H + H +H
Sbjct: 344 SQKQNLIEHEKIHTGEKPYACNECGRAFSRMSSVTLHMRSHTGEKPYKCNKCGKAFSQCSVFIIHMRSHTGEKPYVCSECGKAFSQSSSLTVHMRNHTAEKPYECKECGKAFSRKENLITHQKIHTGEKPYECSECGKAFIQMSNLIRHQRIHTGEKPYACTVCGKAFSQKSNLTEHEKIHTGEKPYHCNQCGKAFSQRQNLLEHEKIHTGEKPFKCNECGKAFSRISSLTLHVRSHTGEKPYECNKCGKAFSQCSLLIIHMRSHTGEKPFECNECGKAFSQRASLSIHKRGHTGERH 641 The following BLAST results are available for this feature:
BLAST of TCONS_00044844 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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