TCONS_00044835 (transcript) - C. hemisphaerica

Overview
NameTCONS_00044835
Unique NameTCONS_00044835
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length654

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00044835 ID=TCONS_00044835|Name=TCONS_00044835|organism=Clytia hemisphaerica|type=transcript|length=654bp
GCTGTATGGACGCCTCATGTTGCAAACCAGAGGCAAGTTAAAATGCATAT
TAAGTATTTCATATCGTCTGCGATATATCTAggtataatatctaaatagt
tTATAAAatagtattttattttctactaTATGTTCTTTTTGTTAGTTACT
ATATTGTGCCTAGGGTGTGTATGTTTTTATCGAGTCCTTATCACAAGTAG
AGCATNCTCCTCCGTGGCCGGGTCTGTGGGTAGGCTGGGCTGGCTCCCCG
TCATTGCGGGGTGTGTCCTCAGAGACCTCCTCCGTGGCAGGTTCTGTGGG
AGGGCTGGGCTGGCTTCCCGTCATTGCGGGGTGTGTCCTCAGTGACCTCC
TCCGTGGCCGGGTCTGTGGGTAGGCTGGGCTGGCTCCCCGTCATTGCGGG
GTGTGTCCTCAGAGACCTCCTCCGTGGCAGGTTCTGTGGGAGGGCTGGGC
TGGCTTCCCGTCATTGCGGGGTGTGTCCTTGACCTCCTCCGTGGCCGGGT
CTGTGGGTAGACTGGGCTGGCTCCCCGTGGGCGCGGGGCGTGTCCTCAGA
GACCTCCTCCACCACAGGGTCTGTGGGAGGGCTGGGCTGGCTTCCCGTCA
TTGCGGGGTGTGTCCTTGACCTCCTCCGTGGCCGGGTCTGGGGTTAGGCT
GGGC
Run BLAST on NCBI

transcript from alignment at sc0006290:422..2083-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00044835 ID=TCONS_00044835|Name=TCONS_00044835|organism=Clytia hemisphaerica|type=transcript|length=1662bp|location=Sequence derived from alignment at sc0006290:422..2083- (Clytia hemisphaerica)
GCTGTATGGACGCCTCATGTTGCAAACCAGAGGCAAGTTAAAATGCATAT
TAAGTATTTCATATCGTCTGCGATATATCTAGGTATAATATCTAAATAGT
TTATAAAATAGTATTTTATTTTCTACTATATGTTCTTTTTGTTAGTTACT
ATATTGTGCCTAGGGTGTGTATGTTTTTATCGAGTCCTTATCACAAGTAG
AGCATNCTCCTCCGTGGCCGGGTCTGTGGGTAGGCTGGGCTGGCTCCCCG
TCATTGCGGGGTGTGTCCTCAGAGACCTCCTCCGTGGCAGGTTCTGTGGG
AGGGCTGGGCTGGCTTCCCGTCATTGCGGGGTGTGTCCTCAGTGACCTCC
TCCGTGGCCGGGTCTGTGGGTAGGCTNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNAGTTTACATATATTGTTTCCCTAGAGAGGGGT
ATGGGCCTAGTTAAACAGTAATAAATCATGACGCAAGAATGATTTCTTGA
TTCACGTCAATTTTATATATAAGTTTAAGTATTTCATATCGTTTTCGATA
GATTTAAGTATAAAATCAAATTAATTTATAAGATAATATTTTATTTTCTA
TTATATGTTCTTTTTGTTCCTATATATGGTTCCTAGGGTGTGTATGTTTT
TATCGAGTCATTATCACAAGTAGAGCATCAGTTGTACAGATAGCTGGTCA
AGACTTAGACGAGGGCAAGAATTCTCAAGTTATCAAGGAATTATATTTGG
CATCCCACAACTGGCTAACATGTAGTAGAAAGGGCCAGGATAGAGTTGAC
TGTAAAGGAGGTACGACCAATAACAAGTTTGTTTTTTTTTGAAGTTACCA
ATGGCTAGAATTGATAGCATTATGCAGCTTTGGGGATCCAAATTATTTCG
CTTTTCCTTTCAATAAAGGGCCCGTCATTGCGGGGTGTGTCCTTGACCTC
CTCCGTGGCCGGGACTGTGGGTAGGCTGGGCTGGCCCGTCATTGCGGGGG
GTGTCCTCAGAGACCTCCTCCGTGGCCGGGTCTGTGGGTAGACTGGGCTG
GCTCCCCGTGGGCGCGGGGCGTGTCCTCAGAGACCTCCTCCGTGGCCGGG
TCTGTGGGTAGACTGGGCTGGCTCCCCGTGGGCGCGGGGCGTGTCCTCAG
AGACCTCCTCCGTGGCCGGGTCTGGGGGTAGGCTGGGCTGGCTCCCCGTC
ATTGCGGGGTGTGTCCTCAGAGACCTCCTCCGTGGCAGGTTCTGTGGGAG
GGCTGGGCTGGCTTCCCGTCATTGCGGGGTGTGTCCTTGACCTCCTCCGT
GGCCGGGTCTGTGGGTAGACTGGGCTGGCTCCCCGTGGGCGCGGGGCGTG
TCCTCAGAGACCTCCTCCACCACAGGGTCTGTGGGAGGGCTGGGCTGGCT
TCCCGTCATTGCGGGGTGTGTCCTTGACCTCCTCCGTGGCCGGGTCTGGG
GTTAGGCTGGGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_028440XLOC_028440Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044835-exon-sc0006290-1575043694:1711..2083TCONS_00044835-exon-sc0006290-1575043694:1711..2083Clytia hemisphaericaexon
TCONS_00044835-exon-sc0006290-1575043694:422..702TCONS_00044835-exon-sc0006290-1575043694:422..702Clytia hemisphaericaexon
TCONS_00044835-exon-sc0006290-1510915933:1711..2083TCONS_00044835-exon-sc0006290-1510915933:1711..2083Clytia hemisphaericaexon
TCONS_00044835-exon-sc0006290-1510915933:422..702TCONS_00044835-exon-sc0006290-1510915933:422..702Clytia hemisphaericaexon
TCONS_00044835-exon-sc0006290-1491911889:1711..2083TCONS_00044835-exon-sc0006290-1491911889:1711..2083Clytia hemisphaericaexon
TCONS_00044835-exon-sc0006290-1491911889:422..702TCONS_00044835-exon-sc0006290-1491911889:422..702Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0006290supercontigsc0006290:422..2083 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.396531	0.352427	0.845207	1.88599	0.39179	0.425246	0.943323	1.69286	3.42292	3.36166	8.00977	3.64789	10.0358	8.20541	7.85677	7.47861	8.33251	10.1951	5.01113	3.61432	8.4379	6.23299	4.14503	4.22543	1.78667	2.18845	4.32701	5.06261	0.842676	0.870627
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00044835 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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