TCONS_00044825 (transcript) - C. hemisphaerica

Overview
NameTCONS_00044825
Unique NameTCONS_00044825
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length798

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00044825 ID=TCONS_00044825|Name=TCONS_00044825|organism=Clytia hemisphaerica|type=transcript|length=798bp
AGGTTTGGAGAATATTTTTGAAGGCTGGATTACCAATACATCGTTTAATA
TGGAACATAAGAAACATTGTTCAAAATGAAAGCCTTATTGGTGATGAAGA
AATTGTTGATTTGGTCTGTCAAACACTTGAGAAAAATCACCAGCATATTT
CAGCGCTGACGGTTCTGAAGCCTTACAtggaatgtttaaaaattgcacaa
gACATTCAGGAAGGAAATCGCACAAgttttcgaagaatcctttcTGCTAC
CAAGAATTTATACATTAGAAGACTGGTTGATGGTAACCACATTGCTGGCA
AGAAAGTTTTGATCTCATCTTCGTATTTCATCAAAGAGAACGAAAACGAC
AAAAGACATGACCAATATCACCTAGAGCCTTTAATTGGGCTTCTAGCTGC
ATTAAGTGATGTCTTTGGTCCTGAAAATACACACTTCATTGAGTTCGATT
CTCAATCCAGAACAAGACCTCCATCTGCAAGTTCTAGAAAGCGTCCACGA
AGTAATGGTGCAAACCAATCTAATTCTCAACCAGGAAATTCTGGAAACGA
GACCAGGATCTTAATGAGAAAAAACATCGATTTCCATAACAACAGACCTG
GTAGCGATTTTGAAAAGATGTTTGAACAAGCTCAATCATTTGCAAAATCC
AAAGCTCATCAAATGGCAATCTTGAAACATGCTAAGAGTCGACGAACACC
ACCAGACGAGccgtttcaaaatttcaataatttcaacaaaaagCAACCCA
ATACTTTTGGAAGTGATTTGCTGTCACCTATCCTCTATGCATCTTCAA
Run BLAST on NCBI

protein sequence of TCONS_00044825-protein

>TCONS_00044825-protein ID=TCONS_00044825-protein|Name=TCONS_00044825-protein|organism=Clytia hemisphaerica|type=polypeptide|length=265bp
VWRIFLKAGLPIHRLIWNIRNIVQNESLIGDEEIVDLVCQTLEKNHQHIS
ALTVLKPYMECLKIAQDIQEGNRTSFRRILSATKNLYIRRLVDGNHIAGK
KVLISSSYFIKENENDKRHDQYHLEPLIGLLAALSDVFGPENTHFIEFDS
QSRTRPPSASSRKRPRSNGANQSNSQPGNSGNETRILMRKNIDFHNNRPG
SDFEKMFEQAQSFAKSKAHQMAILKHAKSRRTPPDEPFQNFNNFNKKQPN
TFGSDLLSPILYASS
Run BLAST on NCBI

transcript from alignment at sc0006282:14..2123+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00044825 ID=TCONS_00044825|Name=TCONS_00044825|organism=Clytia hemisphaerica|type=transcript|length=2110bp|location=Sequence derived from alignment at sc0006282:14..2123+ (Clytia hemisphaerica)
AGGTTTGGAGAATATTTTTGAAGGCTGGATTACCAATACATCGTTTAATA
TGGAACATAAGAAACATTGTTCAAAATGAAAGCCTTATTGGTGATGAAGA
AATTGTTGATTTGGTCTGTCAAACACTTGAGAAAAATCACCAGCATATTT
CAGCGCTGACGGTTGGTTTATAtcctaaaaacattttcttcgctTACTGC
AAAATCAATAACTATGAGAAGAGATGTAACAATATTATTGATGGCAGGTT
ATGATGATCTCACCTCTGAATCATGAAACACTTAATTCTTTATGGATAAT
AATCtacaataaagaaaaagaagtttttatatgtttcaaaagaacatttt
aaaaaacttcaaaactagTTTACACATCGCTTGTTTGCTCATGGTAGTTT
AGTTCGTTGAAATTTGGTCTGGTGCCTAAAGAACAGCCCCCCTGTTtgtt
agactagagtctacttttggctgaactttgcttttcgataattttttatg
acgctgagtccagtgaagtagactaggagcgtttggcgagatcgccattt
tgaaagaaaatgttaagaatccaaataataataaaactatgagaaacaaa
catcaataacagatttgcaatcccttattctcaaataaaaacatcaaaca
ttgcttcatactgtttttaccttccaaaaacaactaaaatctgacAGACT
GTTTGTTTGTTATCTTCAAACCTGCCCTGCTCTGTTTATAAGGCCCCTGA
GAGTCTCTGTCTATCGTATGTGAAAAATCACTTAGCCTTCTTTACTTTAT
AGGTTCTGAAGCCTTACAtggaatgtttaaaaattgcacaagACATTCAG
GAAGGAAATCGCACAAgttttcgaagaatcctttcTGCTACCAAGAATTT
ATACATTAGAAGACTGGTAAAAATGAATCATTTTTTCAAACGTTCCTTCC
CTCCCCCGCCGGAGGATGATTGTAAaacttgacagaaaatcgtaatttta
ttcatttcaaTTAGTTTTCGAGCACTACCATAATACCTCCTAGTTCGAAC
AGtgctaaaaacttttaaaattgaatagTCAATAGAAACTATTATATCAT
TTCTTGTTATATTTTAAGGTTGATGGTAACCACATTGCTGGCAAGAAAGT
TTTGATCTCATCTTCGTATTTCATCAAAGAGAACGAAAACGACAAAAGAC
ATGACCAATATCACCTAGAGCCTTTAATTGGGCTTCTAGCTGCATTAAGT
GATGTCTTTGGTCCTGAAAATACACACTTCATTGAGTTCGATTCTCAATC
CAGAACAAGACCTCCATCTGCAAGTTCTAGAAAGCGTCCACGAAGTAATG
GTGCAAACCAATCTAATTCTCAACCAGGAAATTCTGGAAACGAGACCAGG
ATCTTAATGAGAAAAAACATCGATTTCCATAACAACAGACCTGGTAGCGA
TTTTGAAAAGATGTTTGAACAAGCTCAATCATTTGCAAAATCCAAAGCTC
ATCAAATGGTAAAATCTTTGTTTCATTATGCCCCAtaagcttttttttat
aaatacatccaaagttttcggattttattaactttttgagttttaagcct
aaatatgttttttaacatgttcttattttcaccattttgtgggtattttt
gtccattttcctaagaaactaGAGTccgaaaagccttaaaatgttcttaa
cttgttctttaaaatttggcccttgtatagtttgttattataaaaaaacg
tgtacgttaCTGACTCTTATACCAGGACCAAGGAGAAAGTTaaatccgcc
atctttaattggagttttaaaaaacataaacatcGGTCCCAGTCccaatc
gagtttcagtccgttatctTTCCCCCCACTGGCTGGAAAATGTCACCGGG
TCTGCGAGAAAGGGGCGTTTCAAGGTAAAGTGTTTtatcttgtttatttt
ttatcgtCTATTGATTCTTTTTAACAGGCAATCTTGAAACATGCTAAGAG
TCGACGAACACCACCAGACGAGccgtttcaaaatttcaataatttcaaca
aaaagCAACCCAATACTTTTGGAAGTGATTTGCTGTCACCTATCCTCTAT
GCATCTTCAA

Coding sequence (CDS) from alignment at sc0006282:14..2123+

>TCONS_00044825 ID=TCONS_00044825|Name=TCONS_00044825|organism=Clytia hemisphaerica|type=CDS|length=3180bp|location=Sequence derived from alignment at sc0006282:14..2123+ (Clytia hemisphaerica)
GTTTGGAGAATATTTTTGAAGGCTGGATTACCAATACATCGTTTAATATG
GAACATAAGAAACATTGTTCAAAATGAAAGCCTTATTGGTGATGAAGAAA
TTGTTGATTTGGTCTGTCAAACACTTGAGAAAAATCACCAGCATATTTCA
GCGCTGACGGTTCTGAAGCCTTACAtggaatgtttaaaaattgcacaagA
CATTCAGGAAGGAAATCGCACAAgttttcgaagaatcctttcTGCTACCA
AGAATTTATACATTAGAAGACTGGTTGATGGTAACCACATTGCTGGCAAG
AAAGTTTTGATCTCATCTTCGTATTTCATCAAAGAGAACGAAAACGACAA
AAGACATGACCAATATCACCTAGAGCCTTTAATTGGGCTTCTAGCTGCAT
TAAGTGATGTCTTTGGTCCTGAAAATACACACTTCATTGAGTTCGATTCT
CAATCCAGAACAAGACCTCCATCTGCAAGTTCTAGAAAGCGTCCACGAAG
TAATGGTGCAAACCAATCTAATTCTCAACCAGGAAATTCTGGAAACGAGA
CCAGGATCTTAATGAGAAAAAACATCGATTTCCATAACAACAGACCTGGT
AGCGATTTTGAAAAGATGTTTGAACAAGCTCAATCATTTGCAAAATCCAA
AGCTCATCAAATGGCAATCTTGAAACATGCTAAGAGTCGACGAACACCAC
CAGACGAGccgtttcaaaatttcaataatttcaacaaaaagCAACCCAAT
ACTTTTGGAAGTGATTTGCTGTCACCTATCCTCTATGCATCTTCAGTTTG
GAGAATATTTTTGAAGGCTGGATTACCAATACATCGTTTAATATGGAACA
TAAGAAACATTGTTCAAAATGAAAGCCTTATTGGTGATGAAGAAATTGTT
GATTTGGTCTGTCAAACACTTGAGAAAAATCACCAGCATATTTCAGCGCT
GACGGTTCTGAAGCCTTACAtggaatgtttaaaaattgcacaagACATTC
AGGAAGGAAATCGCACAAgttttcgaagaatcctttcTGCTACCAAGAAT
TTATACATTAGAAGACTGGTTGATGGTAACCACATTGCTGGCAAGAAAGT
TTTGATCTCATCTTCGTATTTCATCAAAGAGAACGAAAACGACAAAAGAC
ATGACCAATATCACCTAGAGCCTTTAATTGGGCTTCTAGCTGCATTAAGT
GATGTCTTTGGTCCTGAAAATACACACTTCATTGAGTTCGATTCTCAATC
CAGAACAAGACCTCCATCTGCAAGTTCTAGAAAGCGTCCACGAAGTAATG
GTGCAAACCAATCTAATTCTCAACCAGGAAATTCTGGAAACGAGACCAGG
ATCTTAATGAGAAAAAACATCGATTTCCATAACAACAGACCTGGTAGCGA
TTTTGAAAAGATGTTTGAACAAGCTCAATCATTTGCAAAATCCAAAGCTC
ATCAAATGGCAATCTTGAAACATGCTAAGAGTCGACGAACACCACCAGAC
GAGccgtttcaaaatttcaataatttcaacaaaaagCAACCCAATACTTT
TGGAAGTGATTTGCTGTCACCTATCCTCTATGCATCTTCAGTTTGGAGAA
TATTTTTGAAGGCTGGATTACCAATACATCGTTTAATATGGAACATAAGA
AACATTGTTCAAAATGAAAGCCTTATTGGTGATGAAGAAATTGTTGATTT
GGTCTGTCAAACACTTGAGAAAAATCACCAGCATATTTCAGCGCTGACGG
TTCTGAAGCCTTACAtggaatgtttaaaaattgcacaagACATTCAGGAA
GGAAATCGCACAAgttttcgaagaatcctttcTGCTACCAAGAATTTATA
CATTAGAAGACTGGTTGATGGTAACCACATTGCTGGCAAGAAAGTTTTGA
TCTCATCTTCGTATTTCATCAAAGAGAACGAAAACGACAAAAGACATGAC
CAATATCACCTAGAGCCTTTAATTGGGCTTCTAGCTGCATTAAGTGATGT
CTTTGGTCCTGAAAATACACACTTCATTGAGTTCGATTCTCAATCCAGAA
CAAGACCTCCATCTGCAAGTTCTAGAAAGCGTCCACGAAGTAATGGTGCA
AACCAATCTAATTCTCAACCAGGAAATTCTGGAAACGAGACCAGGATCTT
AATGAGAAAAAACATCGATTTCCATAACAACAGACCTGGTAGCGATTTTG
AAAAGATGTTTGAACAAGCTCAATCATTTGCAAAATCCAAAGCTCATCAA
ATGGCAATCTTGAAACATGCTAAGAGTCGACGAACACCACCAGACGAGcc
gtttcaaaatttcaataatttcaacaaaaagCAACCCAATACTTTTGGAA
GTGATTTGCTGTCACCTATCCTCTATGCATCTTCAGTTTGGAGAATATTT
TTGAAGGCTGGATTACCAATACATCGTTTAATATGGAACATAAGAAACAT
TGTTCAAAATGAAAGCCTTATTGGTGATGAAGAAATTGTTGATTTGGTCT
GTCAAACACTTGAGAAAAATCACCAGCATATTTCAGCGCTGACGGTTCTG
AAGCCTTACAtggaatgtttaaaaattgcacaagACATTCAGGAAGGAAA
TCGCACAAgttttcgaagaatcctttcTGCTACCAAGAATTTATACATTA
GAAGACTGGTTGATGGTAACCACATTGCTGGCAAGAAAGTTTTGATCTCA
TCTTCGTATTTCATCAAAGAGAACGAAAACGACAAAAGACATGACCAATA
TCACCTAGAGCCTTTAATTGGGCTTCTAGCTGCATTAAGTGATGTCTTTG
GTCCTGAAAATACACACTTCATTGAGTTCGATTCTCAATCCAGAACAAGA
CCTCCATCTGCAAGTTCTAGAAAGCGTCCACGAAGTAATGGTGCAAACCA
ATCTAATTCTCAACCAGGAAATTCTGGAAACGAGACCAGGATCTTAATGA
GAAAAAACATCGATTTCCATAACAACAGACCTGGTAGCGATTTTGAAAAG
ATGTTTGAACAAGCTCAATCATTTGCAAAATCCAAAGCTCATCAAATGGC
AATCTTGAAACATGCTAAGAGTCGACGAACACCACCAGACGAGccgtttc
aaaatttcaataatttcaacaaaaagCAACCCAATACTTTTGGAAGTGAT
TTGCTGTCACCTATCCTCTATGCATCTTCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_028434XLOC_028434Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044825-exon-sc0006282-1491911889:14..174TCONS_00044825-exon-sc0006282-1491911889:14..174Clytia hemisphaericaexon
TCONS_00044825-exon-sc0006282-1510915933:14..174TCONS_00044825-exon-sc0006282-1510915933:14..174Clytia hemisphaericaexon
TCONS_00044825-exon-sc0006282-1575043694:14..174TCONS_00044825-exon-sc0006282-1575043694:14..174Clytia hemisphaericaexon
TCONS_00044825-exon-sc0006282-1491911889:816..929TCONS_00044825-exon-sc0006282-1491911889:816..929Clytia hemisphaericaexon
TCONS_00044825-exon-sc0006282-1510915933:816..929TCONS_00044825-exon-sc0006282-1510915933:816..929Clytia hemisphaericaexon
TCONS_00044825-exon-sc0006282-1575043694:816..929TCONS_00044825-exon-sc0006282-1575043694:816..929Clytia hemisphaericaexon
TCONS_00044825-exon-sc0006282-1491911889:1132..1521TCONS_00044825-exon-sc0006282-1491911889:1132..1521Clytia hemisphaericaexon
TCONS_00044825-exon-sc0006282-1510915933:1132..1521TCONS_00044825-exon-sc0006282-1510915933:1132..1521Clytia hemisphaericaexon
TCONS_00044825-exon-sc0006282-1575043694:1132..1521TCONS_00044825-exon-sc0006282-1575043694:1132..1521Clytia hemisphaericaexon
TCONS_00044825-exon-sc0006282-1491911889:1991..2123TCONS_00044825-exon-sc0006282-1491911889:1991..2123Clytia hemisphaericaexon
TCONS_00044825-exon-sc0006282-1510915933:1991..2123TCONS_00044825-exon-sc0006282-1510915933:1991..2123Clytia hemisphaericaexon
TCONS_00044825-exon-sc0006282-1575043694:1991..2123TCONS_00044825-exon-sc0006282-1575043694:1991..2123Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044825-proteinTCONS_00044825-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0006282supercontigsc0006282:14..2123 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.82496	4.42784	3.63047	3.03146	4.2318	3.40393	3.48289	3.52069	4.03713	5.49793	3.79363	3.87387	10.4652	7.52279	6.51269	6.38966	3.95125	5.57724	9.21537	13.917	4.42545	5.05193	3.48388	4.97262	12.0523	10.8406	3.28842	2.81546	1.69507	1.16313
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00044825 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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