TCONS_00044824 (transcript) - C. hemisphaerica

Overview
NameTCONS_00044824
Unique NameTCONS_00044824
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length329

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00044824 ID=TCONS_00044824|Name=TCONS_00044824|organism=Clytia hemisphaerica|type=transcript|length=329bp
CGAAAGCAGCCATCGAGGCCAAATGATGGAAAAGCCGTTCCGGAGacccc
cctcagctggaaatggCCTAGGCGTTccgggaaaatttcaaaaagtttgc
tcCTGGAAATGTATAGCCGTTCcctggaaaaaatttgaaagttctctaac
aatttccagctggaaattcaCACGTGTTCCAGGCTGATTTTACGGAAGTT
TTTCACAGCTGGTAGAATTTTGAAGATGTTCCTTTAACCAACTAGCTGGA
AATCTGGAGCCATTCCCGGGACGATTTCtagcttctttttctttttttct
gagcCGTTCCTTGAGTTAGCCAGCTGGAA
Run BLAST on NCBI

transcript from alignment at sc0006280:478..806

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00044824 ID=TCONS_00044824|Name=TCONS_00044824|organism=Clytia hemisphaerica|type=transcript|length=329bp|location=Sequence derived from alignment at sc0006280:478..806 (Clytia hemisphaerica)
TTCCAGCTGGCTAACTCAAGGAACGgctcagaaaaaaagaaaaagaagct
aGAAATCGTCCCGGGAATGGCTCCAGATTTCCAGCTAGTTGGTTAAAGGA
ACATCTTCAAAATTCTACCAGCTGTGAAAAACTTCCGTAAAATCAGCCTG
GAACACGTGtgaatttccagctggaaattgttagagaactttcaaatttt
ttccaggGAACGGCTATACATTTCCAGgagcaaactttttgaaattttcc
cggAACGCCTAGGccatttccagctgaggggggtCTCCGGAACGGCTTTT
CCATCATTTGGCCTCGATGGCTGCTTTCG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_028433XLOC_028433Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044824-exon-sc0006280-1491911889:478..806TCONS_00044824-exon-sc0006280-1491911889:478..806Clytia hemisphaericaexon
TCONS_00044824-exon-sc0006280-1510915933:478..806TCONS_00044824-exon-sc0006280-1510915933:478..806Clytia hemisphaericaexon
TCONS_00044824-exon-sc0006280-1575043694:478..806TCONS_00044824-exon-sc0006280-1575043694:478..806Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0006280supercontigsc0006280:478..806 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0.446983	0	0.151678	2.84688	2.18466	0.857272	0	2.48278	3.42029	2.96064	4.49732	2.40407	1.41873	2.41463	4.64792	1.70687	2.33357	3.44182	2.6438	2.18014	2.8758	0.72742	0.707459	1.10122	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00044824 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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