TCONS_00044822 (transcript) - C. hemisphaerica

Overview
NameTCONS_00044822
Unique NameTCONS_00044822
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length609

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00044822 ID=TCONS_00044822|Name=TCONS_00044822|organism=Clytia hemisphaerica|type=transcript|length=609bp
CCAACTGTCTTTAAACAATTCCCATTCTCGTTCGTCAGTATTTATGTTGA
TAATTGGGCGATCCGGGGCTTTGGTTTTTGGCCTGACATTGGCTGGTCCG
TTGTTTGGTTGTTGGTTGGCACGTAGTACTGCATTTTCTGTTTGTAAGGT
TTGGAGTTGCTCCATTTGTCGCCTCATCATTTCGATcatttgttgaaatt
gatcattCGTCGCcatgtttgttgttgtttgagTTTCGAAATCGAAAGTT
GTTTTGGCGGATTGTTTCTAGCGTTGGCGTGTGTGTTCGTGGGCGGGCGG
TGTCTTCGTTAGGTTGACGGGCGGCGCTCGCTGGATTATGGTTTACGGGT
TATGGTGAGTGTGACCACGTCTAccaaaacaagatggcgaacAAGGCGAG
TGGCGTACCTTGTGGAATCGTGTAGGATGGTTGACAATCGGTGAGTGTTC
GCTATATTTTGAGTTTTCCTTCAGAAGTACCCCACTTCTGACACCATGCA
GGGTTCGTGGAAAACTTAATAAGAGTTCGATAGCAAACGAATGGAATAGT
AAATCAATATAGACGAATGAATTACAAAGCTGATAAACGTGTCTTCCCTG
TATGATATA
Run BLAST on NCBI

transcript from alignment at sc0006278:1516..2124

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00044822 ID=TCONS_00044822|Name=TCONS_00044822|organism=Clytia hemisphaerica|type=transcript|length=609bp|location=Sequence derived from alignment at sc0006278:1516..2124 (Clytia hemisphaerica)
TATATCATACAGGGAAGACACGTTTATCAGCTTTGTAATTCATTCGTCTA
TATTGATTTACTATTCCATTCGTTTGCTATCGAACTCTTATTAAGTTTTC
CACGAACCCTGCATGGTGTCAGAAGTGGGGTACTTCTGAAGGAAAACTCA
AAATATAGCGAACACTCACCGATTGTCAACCATCCTACACGATTCCACAA
GGTACGCCACTCGCCTTgttcgccatcttgttttggTAGACGTGGTCACA
CTCACCATAACCCGTAAACCATAATCCAGCGAGCGCCGCCCGTCAACCTA
ACGAAGACACCGCCCGCCCACGAACACACACGCCAACGCTAGAAACAATC
CGCCAAAACAACTTTCGATTTCGAAActcaaacaacaacaaacatgGCGA
CGaatgatcaatttcaacaaatgATCGAAATGATGAGGCGACAAATGGAG
CAACTCCAAACCTTACAAACAGAAAATGCAGTACTACGTGCCAACCAACA
ACCAAACAACGGACCAGCCAATGTCAGGCCAAAAACCAAAGCCCCGGATC
GCCCAATTATCAACATAAATACTGACGAACGAGAATGGGAATTGTTTAAA
GACAGTTGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_028431XLOC_028431Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044822-exon-sc0006278-1491911889:1516..2124TCONS_00044822-exon-sc0006278-1491911889:1516..2124Clytia hemisphaericaexon
TCONS_00044822-exon-sc0006278-1510915933:1516..2124TCONS_00044822-exon-sc0006278-1510915933:1516..2124Clytia hemisphaericaexon
TCONS_00044822-exon-sc0006278-1575043694:1516..2124TCONS_00044822-exon-sc0006278-1575043694:1516..2124Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0006278supercontigsc0006278:1516..2124 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0.110376	0	0.119609	0.189034	0.114031	0.213508	0	0.0925788	0.0898593	0.0590699	0.176963	0.183778	0.201454	0.324287	0.0665825	0.545959	0.591775	0.934564	0.795653	0.970876	0.325029	0.523674	0.0952272	0.764892	0.364853	0.129794	0	0.100299
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00044822 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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