TCONS_00044817 (transcript) - C. hemisphaerica

Overview
NameTCONS_00044817
Unique NameTCONS_00044817
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length505

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00044817 ID=TCONS_00044817|Name=TCONS_00044817|organism=Clytia hemisphaerica|type=transcript|length=505bp
GAAAGGTGATTGAAGGAAACGAATTAGTTTCAATGATGGCTAAGGCCACA
TCTAAATATATTGTTTGTAATACATTAGatctaaatgaaaagaaagaaga
atataAACTAATCTCNNNNNNNGAGAGGTCATGGTCACTGTAGATAGTGT
TcggtttctttttatatatacagTTCAACGTTTCTTTATATACAGTTCAA
TGGCTCTTTCCCCTATCGGCGGGGAGCAAGTGGTTGTTGTTCCAATATGC
CAGGCGCGTTATGAGATGCTAATCGTCGTAGGATATTTGATGAAGATCTG
GTAACCATTGCTTGTGTTGATTGTGCTGGCTGAGGCTGAGCGGGCATAGG
AACTGTTGGATGAGGAATAGTTGGAGGAGTGGTCTCTAATGGTGAGGATG
GAAGCAGATTGGTGGGTGTGGGTAGTGCTGTTGGTGATACAAATGTTGCT
GGTCGAAGGAAGCGACGATTTTGCAGTGTCACCCTCCCTGAGCCATTGGT
TCTGA
Run BLAST on NCBI

transcript from alignment at sc0006270:1121..1625

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00044817 ID=TCONS_00044817|Name=TCONS_00044817|organism=Clytia hemisphaerica|type=transcript|length=505bp|location=Sequence derived from alignment at sc0006270:1121..1625 (Clytia hemisphaerica)
TCAGAACCAATGGCTCAGGGAGGGTGACACTGCAAAATCGTCGCTTCCTT
CGACCAGCAACATTTGTATCACCAACAGCACTACCCACACCCACCAATCT
GCTTCCATCCTCACCATTAGAGACCACTCCTCCAACTATTCCTCATCCAA
CAGTTCCTATGCCCGCTCAGCCTCAGCCAGCACAATCAACACAAGCAATG
GTTACCAGATCTTCATCAAATATCCTACGACGATTAGCATCTCATAACGC
GCCTGGCATATTGGAACAACAACCACTTGCTCCCCGCCGATAGGGGAAAG
AGCCATTGAACTGTATATAAAGAAACGTTGAActgtatatataaaaagaa
accgAACACTATCTACAGTGACCATGACCTCTCNNNNNNNGAGATTAGTT
tatattcttctttcttttcatttagatCTAATGTATTACAAACAATATAT
TTAGATGTGGCCTTAGCCATCATTGAAACTAATTCGTTTCCTTCAATCAC
CTTTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_028426XLOC_028426Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044817-exon-sc0006270-1491911889:1121..1625TCONS_00044817-exon-sc0006270-1491911889:1121..1625Clytia hemisphaericaexon
TCONS_00044817-exon-sc0006270-1510915933:1121..1625TCONS_00044817-exon-sc0006270-1510915933:1121..1625Clytia hemisphaericaexon
TCONS_00044817-exon-sc0006270-1575043694:1121..1625TCONS_00044817-exon-sc0006270-1575043694:1121..1625Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0006270supercontigsc0006270:1121..1625 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.371316	0	0.361827	1.09805	1.30442	2.30606	1.63943	1.2796	1.15783	1.06759	0.42322	0.600674	0	0.455044	0.617563	0.224183	0.328777	0.351382	0	0.36538	0.245981	0	0	0	0.198018	0.229697	0.286762	0.822861	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00044817 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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