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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00044767 ID=TCONS_00044767|Name=TCONS_00044767|organism=Clytia hemisphaerica|type=transcript|length=1488bp
CTTTTTTGTAGTTGTTGATAGAATTGCCTTCAGTTCTCTTTATTTTTAGC
TACTATTTGAACAGCAAAGCTTAAATGAAATTATGACAGAATATTTTAAA
GGCAAACAAGAATGCACACAAAAAATATAGACTTGTTtcccatttttcat
tttagtgAATAAATATAAATTGATTGACTCACGGTATGACTTGAATGTTG
CAAAATGGTATTGATGAGGATTTGATATGCATTCATATGGCAACAGCGGT
TTTTCAGTAGAACAGATATGGCAGACGATATTGATGCCTTCCAATGGTTT
GCGAGGCTGTTTGTATGCTGCCAAAACCACATCTTTGATATTCCCACGAC
AAAGGGCCTTCCCTATAGATGCAAGTTCTGGAGGTAGTGTACGCTCCTTT
GACCATCCTTGTGATGTTATTTTCACACCAGTATGGAGGTGAGAATTATC
AGAATCAACAGAAGTGTTTTTGGAATTACATGTATTGTCGCTGGGTATAC
ATATGGGAGTTGGGACAGAGCAGTTGGAAATTGGCCTGGTTTTCTCAAGT
TCTTTCTGTTGTGGATTGATCATTTCTTCTCgtaaagttgaaatttttgc
gaacaaattttttattttgaataacgaATCTCTACACTTTCTGCAAAGTT
TATCATCACCACCTTGACTGGCTATTCCGATACGATCTAGCACTGGCTTT
GGCAAGAACTGATCAGCAGATCTTATCACTGGATTGACATTATAAACATG
CTTTCCACTGACTGGAACTGGTGTTTTACATGCAACACAGTTTGACTCTA
CCTCTATTGACCACTCAATATCTGGATctaataatgaaataaaaatttgt
cccCGGTCAAATAATGCTAAGCGTGGCTAGTAGATGAGTTGCCACTTCCA
TAGTACAGGAGGTTATTTCACATATGGTCTATTTCACATAtggtttattt
cattgtttttgataaattaaaGAGACCTCTTGTACCCTTATAAtctttta
ggtttttaaaaatgtttatagtTTTGTCTACCACAGGATTCGGACCCAGA
CTTAACACCATTTTACCAAGGACGATGGAATAAGTCTTATGTTTAAGGTT
TGCATCTCTTCAGTAGAGGCTTTCATAAACATAAAATCTAAACCATCTAT
CTACTGTCTCTTTCATAGTTTTTAACTAGATATATACAATGTGTaattag
agaaaaataaataaagttacTGAGCTGTATAACTATCAAACTTACTTGTT
AATAATTCATCCatcattgataaaaaaaacttccttcatttaaaaatatt
tcatgtgctacacaaaaaaaaaacactgcaaaacttgactgactgctgta
ttttttcctttttttggctgtctaaaaaatttgccaaacctttgaaccaa
aacaaaaacagattcCCTTGCATtgctttgtttatgttttttcgtCTGTA
TCTCCAACGCTCCTCACTCTAGAGGTCTACCATTTTGC Run BLAST on NCBI transcript from alignment at sc0006180:380..2153+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00044767 ID=TCONS_00044767|Name=TCONS_00044767|organism=Clytia hemisphaerica|type=transcript|length=1774bp|location=Sequence derived from alignment at sc0006180:380..2153+ (Clytia hemisphaerica)
CTTTTTTGTAGTTGTTGATAGAATTGCCTTCAGTTCTCTTTATTTTTAGC
TACTATTTGAACAGCAAAGCTTAAATGAAATTATGACAGAATATTTTAAA
GGCAAACAAGAATGCACACAAAAAATATAGACTTGTTtcccatttttcat
tttagtgAATAAATATAAATTGATTGACTCACGGTATGACTTGAATGTTG
CAAAATGGTATTGATGAGGATTTGATATGCATTCATATGGCAACAGCGGT
TTTTCAGTAGAACAGATNCAAAATGGTATTGATGAGGATTTGATATGCAT
TCATATGGCAACAGCGGTTTTTCAGTAGAACACATATGGCAGACGATATT
GATGCCTTCCAATGGTTTGCGAGGTAATCTTTCTCATTCTTGATTGCAAT
CGCCATTAACAAACTCTTGCTGAGTGGGGCTTTGTTTTCCATTTCTTTCA
CCAAATCTTGAAagctaaatattttcatttttgatttttgagttgTTCTC
AGGATTGATGGTTTTTTCTTGCAGCACATGTCATCTGCTTCTTTTTGTAC
GTCTTTGATGACCAATTTATGTATAATTTCCTTCATTTTAGGCTGTTTGT
ATGCTGCCAAAACCACATCTTTGATATTCCCACGACAAAGGGCCTTCCCT
ATAGATGCAAGTTCTGGAGGTAGTGTACGCTCCTTTGACCATCCTTGTGA
TGTTATTTTCACACCAGTATGGAGGTGAGAATTATCAGAATCAACAGAAG
TGTTTTTGGAATTACATGTATTGTCGCTGGGTATACATATGGGAGTTGGG
ACAGAGCAGTTGGAAATTGGCCTGGTTTTCTCAAGTTCTTTCTGTTGTGG
ATTGATCATTTCTTCTCgtaaagttgaaatttttgcgaacaaatttttta
ttttgaataacgaATCTCTACACTTTCTGCAAAGTTTATCATCACCACCT
TGACTGGCTATTCCGATACGATCTAGCACTGGCTTTGGCAAGAACTGATC
AGCAGATCTTATCACTGGATTGACATTATAAACATGCTTTCCACTGACTG
GAACTGGTGTTTTACATGCAACACAGTTTGACTCTACCTCTATTGACCAC
TCAATATCTGGATctaataatgaaataaaaatttgtcccCGGTCAAATAA
TGCTAAGCGTGGCTAGTAGATGAGTTGCCACTTCCATAGTACAGGAGGTT
ATTTCACATATGGTCTATTTCACATAtggtttatttcattgtttttgata
aattaaaGAGACCTCTTGTACCCTTATAAtcttttaggtttttaaaaatg
tttatagtTTTGTCTACCACAGGATTCGGACCCAGACTTAACACCATTTT
ACCAAGGACGATGGAATAAGTCTTATGTTTAAGGTTTGCATCTCTTCAGT
AGAGGCTTTCATAAACATAAAATCTAAACCATCTATCTACTGTCTCTTTC
ATAGTTTTTAACTAGATATATACAATGTGTaattagagaaaaataaataa
agttacTGAGCTGTATAACTATCAAACTTACTTGTTAATAATTCATCCat
cattgataaaaaaaacttccttcatttaaaaatatttcatgtgctacaca
aaaaaaaaacactgcaaaacttgactgactgctgtattttttcctttttt
tggctgtctaaaaaatttgccaaacctttgaaccaaaacaaaaacagatt
cCCTTGCATtgctttgtttatgttttttcgtCTGTATCTCCAACGCTCCT
CACTCTAGAGGTCTACCATTTTGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00044767-exon-sc0006180-1491911889:380..644 | TCONS_00044767-exon-sc0006180-1491911889:380..644 | Clytia hemisphaerica | exon |
| TCONS_00044767-exon-sc0006180-1510915933:380..644 | TCONS_00044767-exon-sc0006180-1510915933:380..644 | Clytia hemisphaerica | exon |
| TCONS_00044767-exon-sc0006180-1575043694:380..644 | TCONS_00044767-exon-sc0006180-1575043694:380..644 | Clytia hemisphaerica | exon |
| TCONS_00044767-exon-sc0006180-1491911889:713..752 | TCONS_00044767-exon-sc0006180-1491911889:713..752 | Clytia hemisphaerica | exon |
| TCONS_00044767-exon-sc0006180-1510915933:713..752 | TCONS_00044767-exon-sc0006180-1510915933:713..752 | Clytia hemisphaerica | exon |
| TCONS_00044767-exon-sc0006180-1575043694:713..752 | TCONS_00044767-exon-sc0006180-1575043694:713..752 | Clytia hemisphaerica | exon |
| TCONS_00044767-exon-sc0006180-1491911889:971..2153 | TCONS_00044767-exon-sc0006180-1491911889:971..2153 | Clytia hemisphaerica | exon |
| TCONS_00044767-exon-sc0006180-1510915933:971..2153 | TCONS_00044767-exon-sc0006180-1510915933:971..2153 | Clytia hemisphaerica | exon |
| TCONS_00044767-exon-sc0006180-1575043694:971..2153 | TCONS_00044767-exon-sc0006180-1575043694:971..2153 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0006180 | supercontig | sc0006180:380..2153 + |
Blast
The following BLAST results are available for this feature:
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